FC878756

Overview
NameFC878756
Unique NameFC878756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878756_ssr227 microsatellite FC878756_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11818 contig Ccv1_Contig11818:86..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_RAT (Coiled-coil domain-containing protein 55 OS=Rattus norvegicus GN=Ccdc55 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.118e-25
Identity = 76/221 (34.39%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  246 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEK---EVDKKAEQRRPEKEEIQRAADTPEKERLSAYSNSAAESSRGKEG 893
            V   + R+A K +A+++ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKLEE+      +      + R DVTK+ D+S FY +L  N A G       +  +   V K EK     D+   + RP++    ++     +E   A S+S      G+ G
Sbjct:   40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHL-LNQAVGEEAVPKSSFREARTVIKEEKLRGYPDETNSENRPQQNCALQSGVEEAEENPDADSDSEESCDDGERG 259          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_MOUSE (Coiled-coil domain-containing protein 55 OS=Mus musculus GN=Ccdc55 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.073e-25
Identity = 74/210 (35.24%), Postives = 112/210 (53.33%), Query Frame = 3
Query:  246 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEK----EVDKKAEQRRPEKEEI-----QRAADTPEKER 842
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+      +      +   DVTK+ D+S FY +L  N A G       +  +   V K EK      +  +E R P++  +     Q A + P+ +R
Sbjct:   40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHL-LNQAVGEEAAPKSSFREARTVIKEEKLRGYPDETNSESRPPQQSCVLQRGAQEAEENPDADR 248          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_BOVIN (Coiled-coil domain-containing protein 55 OS=Bos taurus GN=CCDC55 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.947e-25
Identity = 77/220 (35.00%), Postives = 114/220 (51.82%), Query Frame = 3
Query:  246 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKE---VDKKAEQRRPEKEEIQRAADTPEKERLSAYSNSAAESSRGKE 890
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      + R DVTK+ D+S FY +L  N A G     + +  +     K EK     D+ + + R   E   R      +E   A S+  A+SS   E
Sbjct:   42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGFYRHL-LNQAVGEEEVPTCSFREARSEIKEEKSKGYSDEVSSESRIPPENCIRQTGVKVEENPDADSDFDAKSSENDE 260          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_HUMAN (Coiled-coil domain-containing protein 55 OS=Homo sapiens GN=CCDC55 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23
Identity = 80/224 (35.71%), Postives = 117/224 (52.23%), Query Frame = 3
Query:  246 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKL----EEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKE---VDKKAEQRRPEKEEIQRAADTPEKERLSAYSNSAAESSRGKE 890
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL    EE++R  R  AL        DVTK+ D+S FY +L  N A G       +  +     K EK     ++ + + R  +E+     D   +E   A S+  A+SS   E
Sbjct:   41 VSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACL----DVTKQKDLSGFYRHL-LNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDE 259          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_DANRE (Coiled-coil domain-containing protein 55 OS=Danio rerio GN=ccdc55 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 69/225 (30.67%), Postives = 120/225 (53.33%), Query Frame = 3
Query:  258 ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR--RKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFN-LHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKE--------EIQRAADTPEKERLSAYSNSAAESSRGKEGHQ 899
            + ++AIK + +K+   + +KAL ED  V++YD  YD+++++ +   +K+    D +PKYI++L+   +ERK+E +   ERK+ KER  E   FADKE FVT AY++KL+E+Q     +      +   DV K+ D+S FY + L++ V       + +  D+ A+    EK     A +R P  E        E +  +D  + +   A+S + A +   ++  Q
Sbjct:   43 LQKEAIKKKMMKQTRLEMQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFYRHFLNQTVG------EEVVPDRSAQ--SEEKATSSAAAERSPSPESTANRRESEAESHSDDDQVDVKPAFSKTTANNHAKRQYRQ 259          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_CAEEL (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 66/210 (31.43%), Postives = 100/210 (47.62%), Query Frame = 3
Query:  282 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEI----QRAADTP-EKERLSAYSNSAAESSRGK 887
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  +ER KE   F DKE FVTGAY+K+ EE ++   ++A     ++   V K+           K    G G     +L +     K  K+  K   +R    EEI    +++   P EK + S YS+ + E    K
Sbjct:   51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAHARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDMTSVQKQ-----------KLWEIGMGRTLLNDLARDPTAIKQRKKEQKNVRKREDSDEEIDPKPEKSDKKPAEKLKKSIYSDDSDEEKAPK 249          
BLAST of FC878756 vs. ExPASy Swiss-Prot
Match: CCD55_CAEBR (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.715e-15
Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  282 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPEKE 839
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  KER KE   F DKE FVTGAY+K+ EE +++  ++A     ++   V K+           K    G G     +L +     K  K   K   +R    +E ++  D  +KE
Sbjct:   51 RIQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQFSREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDMTSVQKQ-----------KMWEMGMGRTLLNDLARDPTAIKQRKMEKKNVRKREDSGDEEEQKEDVKKKE 228          
The following BLAST results are available for this feature:
BLAST of FC878756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CCD55_RAT3.118e-2534.39Coiled-coil domain-containing protein 55 OS=Rattus... [more]
CCD55_MOUSE4.073e-2535.24Coiled-coil domain-containing protein 55 OS=Mus mu... [more]
CCD55_BOVIN6.947e-2535.00Coiled-coil domain-containing protein 55 OS=Bos ta... [more]
CCD55_HUMAN1.711e-2335.71Coiled-coil domain-containing protein 55 OS=Homo s... [more]
CCD55_DANRE8.492e-2330.67Coiled-coil domain-containing protein 55 OS=Danio ... [more]
CCD55_CAEEL7.698e-1631.43Coiled-coil domain-containing protein 55 homolog O... [more]
CCD55_CAEBR1.715e-1531.75Coiled-coil domain-containing protein 55 homolog O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DG08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878756 ID=FC878756; Name=FC878756; organism=Citrus clementina; type=EST; length=901bp
CACAGCTTTAAATTGATCACGTGCTCTGTGCTCAATTCTGTACGAAAAGA
ACCTTTAATCAGCTTTGTAAACTCGTTCGCTGGAGCCGATGAATCGACTC
AGCGTATAATTGAAAAATCATGAGTAAATACGGCTTGCAACTTAGGGTTA
ATCCATCACAACAAAAGAAACAGCCAACAAATAAGCCTCCGTTGCCACCG
CCTAAGGCTTTTGGTCTTGATGACGACGGCGGCGGCGGCGACGACGTGGA
GGGAGAAATCTCCCGCCAAGCTATCAAGAACAGGGCTCTCAAAGAGATTG
AGGAGCAGCAAAGGAAGGCCTTGGCAGAGGATCCAAATGTGTTTGATTAT
GACGGATGTTATGATGAGATGAAGCAGAAAAGTGTCCGACGTAAAGTGCA
GGATCGTGCAGACACACAGCCGAAATATATTCATAAACTGATTCACAAAG
CTGACGAGCGAAAGCGGGAGCATGACATAATCTATGAGAGGAAACTTACT
AAAGAGAGAAGCAAGGAAGACCACCTTTTTGCAGACAAGGAAAAATTTGT
TACAGGTGCTTACAAGAAGAAACTTGAAGAGCAGCAAAGGTGGGCTCGTG
AACAAGCCTTGCGTGATCTTCGAGATGAGAGAGATGATGTCACCAAGAAG
ACTGATGTGAGTGATTTTTACTTCAACCTTCATAAAAATGTTGCCTTTGG
TGGAGGCAACAAGGACTCAATGAATTTAGACAAGAAGGCTGAAGTAACAA
AGCCAGAGAAAGAGGTAGACAAGAAGGCCGAACAAAGAAGGCCAGAGAAA
GAGGAAATACAAAGAGCTGCTGACACACCAGAGAAAGAACGTTTGTCTGC
CTACTCAAACTCTGCTGCGGAGTCTTCCAGAGGGAAAGAAGGGCATCAGG
C
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