FC878757

Overview
NameFC878757
Unique NameFC878757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878757 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 6.470e-34
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 2 
Query:   23 CLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKS-GGWIAWAINPTAPGMAGSQALVAYKDSKGAV-TVKLYNVSSYESIVPTKKLSFDVWDTSADE-SGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGAL 469
            C DLP L+S+LH+TY++SN SLS+AFVA P+++ GGW+AWAINPT   MAGSQA +AY+   GA   VK YN+SSY S+V   KL+FD W+  A+  SGG + I+  VKVP   A A  +NQVWQ+G +VT  G    H F P NL S   L
Sbjct:   43 CEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLV-EGKLAFDFWNLRAESLSGGRIAIFTTVKVP---AGADSVNQVWQIGGNVT-NGRPGVHPFGPDNLGSHRVL 189
The following BLAST results are available for this feature:
BLAST of FC878757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH6.470e-3453.29Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA33CG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878757 ID=FC878757; Name=FC878757; organism=Citrus clementina; type=EST; length=778bp
CAAAAACGAAATCTACGTCCACTGCCTCGACCTCCCCTCTCTCTCCTCCT
TCCTCCACTTCACCTACGACGCCTCCAACAGATCGCTCTCCATCGCATTC
GTCGCCGCCCCTGCGAAATCCGGCGGCTGGATCGCGTGGGCCATAAACCC
GACGGCCCCGGGCATGGCGGGGTCCCAGGCGCTGGTGGCGTACAAGGACT
CCAAGGGGGCCGTGACCGTTAAGCTGTACAACGTCAGCAGTTACGAATCC
ATCGTTCCGACGAAGAAGCTGTCGTTTGATGTGTGGGACACCAGCGCCGA
CGAGTCCGGGGGGTTGATGAGGATTTACGGGAAGGTTAAGGTGCCGGAGG
AGCTTGCGAAGGCGGGAAAGCTTAACCAGGTCTGGCAGGTGGGGCCCAGT
GTAACGCCCGAGGGGATGATAGCTAAGCATGATTTCGCGCCACCCAATTT
GAACTCTAAGGGGGCTCTGGATTTGAGTGGGGCCCACACCGGCGGGGGTA
GTACCGGAACCGATTCCAGGACTAAGAAGAGAAACATTCATGGGGTATTG
AATGCTGTGAGTTGGGGAATTTTGTTCCCAATTGGAGCCATTATTGCCCG
GTACTTGAGAACTTTCGAGTCTGCAGATCCGGCATGGTTTTATCTCCATG
TACTCTGCCAGTCCTCTGCATATGCTATTGGGGTTGCCGGCTGGGGAACC
GGTCTTAAGCTTGGGAGCGATTCAAAAGGAGTTACATACACTGGGCACCG
GAATATTGGAATTGCCCCTTTCAGTCTT
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