FC878759

Overview
NameFC878759
Unique NameFC878759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 320.857 bits (821), Expect = 5.184e-87
Identity = 177/234 (75.64%), Postives = 193/234 (82.48%), Query Frame = 3
Query:   96 MASTFTAMSSIISMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK--IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+    + AAK+LHFNKDG  +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG I EGVKVVAAGANPVLITRGIEKT+KALV+ELK MS+EVEDSELADVAAVSA NN E+GNMIA+AMSKVGR
Sbjct:    1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGR 225          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.508e-86
Identity = 176/234 (75.21%), Postives = 193/234 (82.48%), Query Frame = 3
Query:   96 MASTFTAMSSIISMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--ALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            MASTFTA SSI SM+APN   TD                    FGRRQ+V   LRR+    + AAK+LHFNKDG  ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG I EGVKVVAAGANPVLITRGIEKT+KALV+ELK MS+EVEDSELADVAAVSA NN E+G+MIA+AMS+VGR
Sbjct:    1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGR 225          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 2.943e-82
Identity = 162/181 (89.50%), Postives = 172/181 (95.03%), Query Frame = 3
Query:  252 RRARTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            R+ R  K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLI EGVKVVAAGANPVLITRGIEKTSKALV+ELK MS+EVEDSELADVAAVSA NN+EVGNMIA+A+SKVGR
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGR 219          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.833e-55
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 3
Query:  420 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLI EGVKV+AAGANPV ITRGIEKT+KALV ELK MS+EVEDSELADVAAVSA NNYE+GNMIA+AMSKVGR
Sbjct:    1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVIAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGR 124          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.414e-52
Identity = 104/166 (62.65%), Postives = 130/166 (78.31%), Query Frame = 3
Query:  294 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKVGR 791
            H   D  + + L+ GVN LAD V +TLGPKGRNVVLE K+GAP+I+NDGVT+AKEVELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG+K VAAGANPV + +GI+KT  ALV E++  S+ V    +A VA +SA N+ EVG MIAQAM KVG+
Sbjct:    4 HVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQVATISAGNDTEVGQMIAQAMDKVGK 169          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.057e-51
Identity = 102/163 (62.58%), Postives = 133/163 (81.60%), Query Frame = 3
Query:  306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            D  A + L+ GVN LAD V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG++ VAAGANP+ + RG+EKT   LV E+  M++ VED++ +A+VA +S+ N+ E+G MIA+AM KVG+
Sbjct:    8 DETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGK 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.021e-50
Identity = 102/168 (60.71%), Postives = 135/168 (80.36%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKV 785
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ AAKT D+AGDGTTT+ VL Q LI EG+K VAAG+NPV + RGI+KT++ALV+E+  +++ VE S +A VA VSA N+ EVG MIAQA+ KV
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSAGNDEEVGAMIAQAVEKV 167          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.619e-50
Identity = 100/168 (59.52%), Postives = 134/168 (79.76%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSELADVAAVSACNNYEVGNMIAQAMSKV 785
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV+E+  +++ VE S +A VA VS+ N+ EVG MIAQA+ KV
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIREGLKNVAAGTNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSSGNDEEVGAMIAQAVEKV 167          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.644e-50
Identity = 102/171 (59.65%), Postives = 135/171 (78.95%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK + F+++  A + L++G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG+K VAAGANP+ + RGI+K  K LV ++   ++ VEDS+ +A VAA+SA N+ EVG MIA+AM KVGR
Sbjct:    2 AKSIIFSEE--ARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGR 170          
BLAST of FC878759 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.129e-49
Identity = 101/171 (59.06%), Postives = 135/171 (78.95%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVLITRGIEKTSKALVSELKHMSQEVEDSE-LADVAAVSACNNYEVGNMIAQAMSKVGR 791
            AK + F+++  A + L++G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG+K VAAGANP+ + RGI+K  K LV ++   ++ VEDS+ +A VAA+SA N+ EVG MIA+AM KVGR
Sbjct:    2 AKSIIFSEE--ARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIAEAMDKVGR 170          
The following BLAST results are available for this feature:
BLAST of FC878759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH5.184e-8775.64RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.508e-8675.21RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA2.943e-8289.50RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE6.833e-5590.32RuBisCO large subunit-binding protein subunit beta... [more]
CH601_ACAM15.414e-5262.6560 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI2.057e-5162.5860 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANAVT1.021e-5060.7160 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP6.619e-5059.5260 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH602_SYNJA8.644e-5059.6560 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH601_SYNJB1.129e-4959.0660 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878759 ID=FC878759; Name=FC878759; organism=Citrus clementina; type=EST; length=791bp
CCAACTCTCAGCTCCTACTCTGCCTGCAGCTCCCCTTATCTCTTTAAACC
CTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTAAACGAATAAATGGC
GTCGACTTTCACTGCCATGTCTTCCATTATCTCCATGATTGCTCCTAATG
GACGAATGACTGATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCA
CTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCT
ACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCA
ACAAGGATGGATATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTT
GCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCT
AGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGG
CCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTA
GTGAGACAAGCAGCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAAC
AACATCTGTTGTTCTTGCTCAAGGGCTTATAACTGAAGGTGTTAAGGTCG
TGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACA
TCTAAGGCTCTTGTTTCTGAGCTCAAGCATATGTCACAAGAGGTTGAAGA
TAGTGAACTTGCCGATGTAGCAGCTGTTAGTGCATGTAACAACTATGAAG
TTGGGAATATGATTGCACAAGCCATGAGTAAAGTGGGACGT
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