FC878760

Overview
NameFC878760
Unique NameFC878760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:381..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878760 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  141 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFL 572
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFL 185          
BLAST of FC878760 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 3
Query:  141 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRS----LSLAQAQAR 524
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S     S   AQAR
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQAR 191          
BLAST of FC878760 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 46/140 (32.86%), Postives = 68/140 (48.57%), Query Frame = 3
Query:   99 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRS 497
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS 171          
BLAST of FC878760 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 3
Query:  141 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLS 503
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS 173          
The following BLAST results are available for this feature:
BLAST of FC878760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH9.398e-1432.89Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ1.357e-1233.56Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH8.796e-1232.86Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.149e-1133.07Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878760 ID=FC878760; Name=FC878760; organism=Citrus clementina; type=EST; length=574bp
AAAATAATTAAACACACCCAACACTCAACTAGGTAGCTATGGTGAACGAT
GGAAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAAGAGTCTACAGCGA
CGGTTCAGTTGATCGAACATGGACCGGACCACCGGAGGTCAAGTTCTTGT
CCGAACCGGTGCCACCCCACAGTGACTTTATTGACAGTGTCGCCACCCAC
GACGTAACCATCAACAAAGAATCCGGCCTCCGTGTCCGAATTTATTCACC
GGAGGAGATCAAGAAACTTAATGGTGATGATTGCAAGAACAAGAAGAAGC
TACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGTTAGCCAAGCT
GATTGGTACATGTACTATCACGTTTACACGAAGCTTGCAAAATCTGTCCC
GGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAGCACCGCCTCC
CGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCTCCGGTCACTA
TCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGACTGAACATGT
GGATTTTCAACGCGTCTTCCTCAT
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