FC878763

Overview
NameFC878763
Unique NameFC878763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7062 contig Ccv1_Contig7062:30..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878763 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.461e-40
Identity = 83/175 (47.43%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  130 DVEAGATPLYPMMSESP-QLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTFWAARRGHDFNFLGPFLFGAVMVLLVFAFIQILFPLGRIS 651
            ++  G   LYP +S    QLRW FIRK+Y I++ QLL T           P++   + +  G+ L+  L I PFI++ PL+ Y+QKHPVN +LL +FT++LSF VG++CA T+G ++L++ ILT  VV SLT YTFWAA++G DF+FLGP LF ++++L+V +FIQ+ FPLG  S
Sbjct:   26 EMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGS-PGILLF--LCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTS 197          
BLAST of FC878763 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 48/172 (27.91%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  118 YRKSDVEAGATPLYPMMSESPQLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTFWAARRGHDFNFLGPFLFGAVMVLLVFAFIQILF 633
            Y +S +E        + S S  +R AF+RK+YSI+++Q+L T          + +  F   + A   L +V  +    ++  L  +   HP+N  LL  FT++ S AV     +    ++L++ I+T  V + LT YT  + R   DF   G  LF  + +L +  F+++ F
Sbjct:    8 YPRSSIEDDFNYGSCVASASVHIRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPA---LIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF 173          
BLAST of FC878763 vs. ExPASy Swiss-Prot
Match: TMBI1_HUMAN (Transmembrane BAX inhibitor motif-containing protein 1 OS=Homo sapiens GN=TMBIM1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  181 QLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTF 534
            ++R  FIRK+YSII++QLL T+          P+S F     A   +   + +  +++L       ++ P N +LL +FT A+ F  G   +  + + ++ + I+TAVV IS+T++ F
Sbjct:   93 KVRHTFIRKVYSIISVQLLITVAIIAIFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNIILLTLFTFAMGFMTGTISSMYQTKAVIIAMIITAVVSISVTIFCF 210          
The following BLAST results are available for this feature:
BLAST of FC878763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BI1L_ARATH4.461e-4047.43BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE2.307e-1227.91Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI1_HUMAN9.693e-1130.51Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878763 ID=FC878763; Name=FC878763; organism=Citrus clementina; type=EST; length=653bp
AAACAATGCCCTAAGGCAGTTAGTTCACTCTTCGGTTCCCTCCCATTTTC
AACCTCGCGCACTTAAAAGGAAGAACTTTCGTTCAATCCAAACAGTTCTA
AAATGTGGGCCCAGCCTTATCGGAAGTCCGACGTGGAGGCAGGGGCGACG
CCTCTGTATCCGATGATGTCGGAGAGTCCGCAGCTCCGGTGGGCCTTTAT
TCGCAAAATCTATTCGATCATAGCCATCCAATTACTGGCGACGATCGCGG
TAGCATCCGTCGTGGTTTCGGTGCGTCCGATTTCACACTTCTTTTCGAGT
ACCGGGGCCGGCCTTGCTCTCTATATTGTGCTAATAATCACGCCTTTCAT
TGTGTTGTGTCCGTTGTATTACTATTACCAGAAGCATCCAGTGAATTATC
TTTTACTTGGAGTTTTCACCATCGCTCTTTCGTTTGCGGTGGGTTTGACG
TGTGCTTACACCAAAGGGGAGGTTATTCTGGAATCTGCAATATTGACGGC
TGTGGTGGTTATTTCACTCACTCTCTACACTTTCTGGGCTGCACGAAGAG
GCCATGATTTCAACTTTCTTGGGCCTTTCTTGTTTGGTGCTGTAATGGTC
CTGCTGGTTTTTGCTTTTATTCAGATTCTATTTCCATTGGGTAGGATTTC
TGT
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