FC878767

Overview
NameFC878767
Unique NameFC878767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12815 contig Ccv1_Contig12815:4..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACO1_AJECA (Acyl-CoA desaturase OS=Ajellomyces capsulata GN=OLE1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.033e-52
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 3
Query:  180 RNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPLRLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            R  + +PKK HITDTP+T ANW+KH++WLNV LI  IP+ GL+QA+W PL L TA+WA+ YYF TGLGITAGYHRLWAH SY ATLPLKI+LAAVGGGAVEGSI            YTDT+KDPYSVRKGLLYSH
Sbjct:   28 RRPNSEPKKVHITDTPITLANWHKHISWLNVTLIIAIPIYGLVQAYWVPLHLKTALWAVVYYFMTGLGITAGYHRLWAHCSYSATLPLKIYLAAVGGGAVEGSIRWWARGHRAHHRYTDTDKDPYSVRKGLLYSH 162          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACO1_SCHPO (Probable acyl-CoA desaturase OS=Schizosaccharomyces pombe GN=SPCC1281.06c PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.468e-34
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 3
Query:  186 KSYDPKKP-HITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPLRLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            + +DPK P HI + P T  NW++H+NWL+  LI G+P++ +   + TPL+  T I+AI YY  +GLGITAGYHRLW+H +Y+A  PL+ FLAA G  A EGSI            YTDT+KDPY+V+KG  Y+H
Sbjct:   38 RKWDPKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYGVFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAH 171          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACO1_YEAST (Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae GN=OLE1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  168 DEPNRNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWW------TPLRLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            ++ N+ K     K HI++ P T  NW++H+NWLN+ L+ G+P++G    W+       PL L   ++++ YY   G+ ITAGYHRLW+H SY A  PL++F A  G  +VEGS             YTDT +DPY  R+GL YSH
Sbjct:   82 EKDNQEKEEAKTKIHISEQPWTLNNWHQHLNWLNMVLVCGMPMIG----WYFALSGKVPLHLNVFLFSVFYYAVGGVSITAGYHRLWSHRSYSAHWPLRLFYAIFGCASVEGSAKWWGHSHRIHHRYTDTLRDPYDARRGLWYSH 222          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  261 WLNVFLIGGIPLMGLIQAWWTP-LRLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            W NVFL+  + L  +      P  +  T +WA   +  T LG+TAG HRLW+H SY+A LPL+IFLAA    A +  I            Y++T+ DP++ R+G  +SH
Sbjct:   52 WRNVFLMSLLHLAAVYSLVLIPKAQPLTLLWAYFCFLLTALGVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSH 160          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 3
Query:   99 QPAAGMMAVDPAYVSQPSPMASKDEPNRNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPL-RLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            Q   G +   P Y+ +      +D+      YDP      + P  K  +     W N+ L+G + L  L      P  ++YT +W + YY  + LGITAG HRLW+H +Y+A LPL++FL      A +  +            +++T+ DP++ R+G  +SH
Sbjct:   29 QNGGGKLEKTPLYLEEDIRPEMRDD-----IYDPNYQD-KEGPKPKLEYV----WRNIILMGLLHLGALYGITLIPTCKIYTFLWVLFYYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSH 181          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 3
Query:   99 QPAAGMMAVDPAYVSQPSPMASKDEPNRNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPL-RLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            Q   G +   P Y+ +      +D+      YDP      + P  K  +     W N+ L+G + L  L      P  ++YT +W + YY  + LGITAG HRLW+H +Y+A LPL++FL      A +  +            +++T+ DP++ R+G  +SH
Sbjct:   29 QNGGGKLEKTPLYLEEDIRPEMRDD-----IYDPTYQD-KEGPKPKLEYV----WRNIILMGLLHLGALYGITLIPTCKIYTFLWVLFYYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSH 181          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.943e-16
Identity = 49/163 (30.06%), Postives = 77/163 (47.24%), Query Frame = 3
Query:   99 QPAAGMMAVDPAYVSQPSPMASKDEPNRNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPL-RLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            Q   G     P YV +      KD+      YDP      + P  K  +     W N+ L+  + L  L      P  ++YT +WA AYY  + +G+TAG HRLW+H +Y+A LPL++FL      A +  +            +++T+ DP++ R+G  +SH
Sbjct:   18 QNGGGKSEKTPQYVEEDIRPEMKDD-----IYDPTYQD-KEGPQGKLEYV----WRNIILMSLLHLGALYGIILIPTCKIYTLLWAFAYYLLSAVGVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSH 170          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  261 WLNVFLIGGIPLMGLIQAWWTPL-RLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            W N+ L+  + L  L      P  + YT +W + YYF + LGITAG HRLW+H SY+A LPL++FL      A +  +            +++T  DP++ R+G  +SH
Sbjct:   73 WRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSH 181          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  261 WLNVFLIGGIPLMGLIQAWWTP-LRLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            W N+ L+  + L GL      P  +LYT ++ I YY  + LGITAG HRLW+H +Y+A LPL+IFL      A +  +            +++T  DP++ R+G  +SH
Sbjct:   69 WRNIILMVLLHLGGLYGIILVPSCKLYTCLFGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSH 177          
BLAST of FC878767 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 48/163 (29.45%), Postives = 76/163 (46.63%), Query Frame = 3
Query:   99 QPAAGMMAVDPAYVSQPSPMASKDEPNRNKSYDPKKPHITDTPLTKANWYKHVNWLNVFLIGGIPLMGLIQAWWTPL-RLYTAIWAIAYYFATGLGITAGYHRLWAHTSYQATLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTEKDPYSVRKGLLYSH 584
            Q   G +   P Y+ +      +D+      YDP      + P  K  +     W N+ L+  + L  L      P  ++YT IW + YY    LGITAG HRLW+H +Y+A LPL++FL      A +  +            +++T+ DP++ R+G  +SH
Sbjct:   29 QNGGGKLEKTPLYLEEDIRPEMRDD-----IYDPTYQD-KEGPKPKLEYV----WRNIILMSLLHLGALYGITLIPTCKIYTYIWVLFYYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSH 181          
The following BLAST results are available for this feature:
BLAST of FC878767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ACO1_AJECA4.033e-5269.63Acyl-CoA desaturase OS=Ajellomyces capsulata GN=OL... [more]
ACO1_SCHPO6.468e-3450.00Probable acyl-CoA desaturase OS=Schizosaccharomyce... [more]
ACO1_YEAST9.046e-2841.38Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae ... [more]
SCD5_BOVIN6.082e-1638.53Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD_SHEEP6.082e-1629.45Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD_CAPHI6.082e-1629.45Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACOD_PIG7.943e-1630.06Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_HUMAN1.355e-1535.78Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]
ACOD1_MOUSE6.725e-1536.70Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_BOVIN1.147e-1429.45Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878767 ID=FC878767; Name=FC878767; organism=Citrus clementina; type=EST; length=584bp
CTTTCACCCATCTAACCCCTCGACACTCGTTTGTTCGAAGGAGGCTCTCG
CATTCTCTGCACTTGCTGCTATCGCTCTCGTGCAACATGCCTTCTCACCA
GCCCGCCGCCGGCATGATGGCTGTCGACCCTGCCTATGTGTCGCAGCCTT
CGCCCATGGCCTCCAAGGACGAGCCTAACCGCAACAAGTCCTACGACCCC
AAGAAGCCTCACATCACCGACACTCCCTTGACAAAGGCCAATTGGTACAA
GCACGTCAACTGGCTCAATGTCTTCCTCATTGGTGGCATCCCCCTCATGG
GTCTGATCCAGGCATGGTGGACTCCCCTCCGTCTTTACACCGCCATCTGG
GCCATTGCCTACTACTTCGCAACCGGTCTCGGCATCACTGCTGGCTACCA
TCGTCTGTGGGCCCACACCTCGTACCAGGCTACTCTTCCCCTCAAGATCT
TCCTCGCCGCTGTTGGTGGCGGTGCCGTCGAGGGCTCCATCAGATGGTGG
GCCCGTGACCACCGCGCTCACCACCGCTACACCGACACTGAGAAAGACCC
TTACTCAGTCCGCAAGGGTCTTCTCTACTCTCAT
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