FC878772

Overview
NameFC878772
Unique NameFC878772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7309 contig Ccv1_Contig7309:551..1436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_PROVI (Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=thrB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.522e-29
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = -2
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW-KEGNLKAVSMVKRLDRVGARLV 884
            A NE+ G      ELV   +E E    G  HADN APAI+G FVLIRSY PLDL+ +  PEK  L   LV P  E  T   R+ LP ++ +          GALVA +L  D   +G++L  D + EPKRAPLIPG          AGA GC+I+G+GP+  A  D+ E     GE M +AF   + +LK+   V  + R GAR++
Sbjct:  118 AANELLGRPCTKMELVHFAIEGERVACGSAHADNAAPAILGNFVLIRSYTPLDLIVIPPPEK--LFCSLVHPHTELRTSFARSVLPTDITLKDATRQWGNVGALVAGLLTSDYALVGRSLV-DVVAEPKRAPLIPGFAEVKEAALNAGALGCSIAGSGPSIFAFSDSAETAHAAGEAMQKAFLASKKSLKSDMWVSPICREGARIL 320          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_CHLPD (Homoserine kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=thrB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.713e-29
Identity = 83/206 (40.29%), Postives = 111/206 (53.88%), Query Frame = -2
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF-WKEGNLKAVSMVKRLDRVGARLV 884
            A NE+ G      ELV   +E E    G  HADN APAI+G FVLIRSY PLDL+ +  PE   L   LV P  E  T   R+ LP  + +          GAL+A +L  D   +G+AL  D + EPKRAPLIPG           GA GC+I+G+GP+  A   ++E  + +G+ M EAF   E NLK+   V  + + GA+++
Sbjct:  118 AANELLGQPCSKMELVHFAVEGERVACGSAHADNAAPAILGNFVLIRSYAPLDLITIPSPE--HLFCTLVHPHTELKTSFARSVLPRSIPLKTATQQWGNVGALIAGLLKSDYDLIGRALV-DVVAEPKRAPLIPGFLDVKHAAIDCGALGCSIAGSGPSVFAFSSSKETAERVGQAMREAFLLPETNLKSDMWVSPICKEGAKVL 320          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_CHLTE (Homoserine kinase OS=Chlorobium tepidum GN=thrB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27
Identity = 79/208 (37.98%), Postives = 109/208 (52.40%), Query Frame = -2
Query:  267 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF-WKEGNLKAVSMVKRLDRVGARLVGS 884
            A NE+FG+     ELV   +E E    G  HADN APA++G F+LIRSY PLDL+ +  P  K L   LV P  E  T   R+ LP  + +          GAL+A +L  D   +G+AL  D + EPKRAPLIPG          AGA GC+I+G+GP+  A   + +  + +G  M  AF      L++   V  +   GAR++ +
Sbjct:  118 AANELFGSPCTKMELVHFAIEGERVACGSAHADNAAPAMLGNFILIRSYNPLDLITIKPP--KNLFGTLVHPHTELKTSFARSVLPKSIPLSTATQQWGNVGALIAGLLMEDYDLIGRALV-DVVAEPKRAPLIPGFNEVKQAALDAGALGCSIAGSGPSVFAFSSSRQTAEAVGSAMQSAFLHSRAALQSDMWVSPICSQGARIIST 322          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_CHLT3 (Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.231e-26
Identity = 78/205 (38.05%), Postives = 110/205 (53.66%), Query Frame = -2
Query:  273 AFNEMFGNKLLPDELVLAGLESEAKVSG-YHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGARLV 884
            A N + G+     ELV   +E E    G  HADN APA++G F+L RSY+PLDL+ ++ P   +L   LV P  E PT   R+ L  E+ +   +      GALVA +L  D   +G+AL  D + EP RAPLIPG          AGA G +I+G+GP+  A  D+  K + I + M E F K  NL++      + R G+R++
Sbjct:  118 AANSLLGSPCTKMELVPFVMEGERIACGSIHADNAAPAMLGNFILTRSYDPLDLIPISTPP--ELYCSLVHPHIEVPTSHARSILKKEIALSSAVRQWGNVGALVAGLLRCDYELIGRALE-DVVAEPVRAPLIPGFYDVKHAALDAGALGGSIAGSGPSIFAFSDSLAKAETIAKAMQETFRKVSNLESDIWFCPVSREGSRIL 319          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_CHLPB (Homoserine kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=thrB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.033e-25
Identity = 73/182 (40.11%), Postives = 96/182 (52.75%), Query Frame = -2
Query:  342 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF 884
            A NE+ G      ELV   +E E    G  HADN APA++G FVLIRSY P+DL+ +  P+   L   LV P  E  T   R+ LP  + +          GAL++ +L  D   +G++L  D I EPKRAPLIPG          AGA GC+I+G+GP+  A   + E    +GE M  AF
Sbjct:  118 AANELMGRPCNKMELVNFAIEGERVACGSAHADNAAPAMLGNFVLIRSYNPIDLITIPSPDN--LYCTLVHPHIEVRTAYARSVLPRMISLKTATEQWGNVGALISGLLTSDYELIGRSLV-DVIAEPKRAPLIPGFYDVKHAALEAGAIGCSIAGSGPSIFAFSSSPETASRVGEAMQTAF 296          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_PYRHO (Homoserine kinase OS=Pyrococcus horikoshii GN=thrB PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.011e-20
Identity = 71/188 (37.77%), Postives = 101/188 (53.72%), Query Frame = -2
Query:  291 DELVL-AGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDR 848
            DEL+L A ++ E K SG  H DN+ P+  GGF +I S  PL   R++F + K L  V+V PE E PT K R  LP+ V +   + N + A +L+ A+  GD   +G+ L  D +  P R  L+P            GAYG T+SG+GP   A+ +N    K IG+ +VE F +E  +KA   V +  R
Sbjct:  111 DELILKAAMKGEEKASGEPHPDNVVPSYYGGFTVIESKSPL---RVHFVDAK-LRGVVVLPEVEIPTAKARKILPSMVPLKDAVKNIAMASSLILALKEGDLETIGRLL-DDNLALPYRKKLMPWFDEIRRVALETGAYGITVSGSGPALFAIGENL---KDIGKTIVEKF-EELGIKAEYWVTKTGR 289          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_METMP (Homoserine kinase OS=Methanococcus maripaludis GN=thrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  384 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNE 884
            A NE+F  KL   ELV      EA  +G  HADN+APAI GGF L  SYEPL++  L+ P   ++L  L  P  +  TK  R  LP E+ +   + N  +A  +V A+ N D    G+ +S D +VEP RA LI G             YG TISG+GP  + +   E
Sbjct:  107 ALNELFELKLSKLELVKYSSLGEAVAAGAPHADNVAPAIFGGFTLTTSYEPLEV--LHIPVDLEVLVAL--PNIQVSTKTAREILPKEIPIKDMVNNVGKAAGMVYALYNNDLDLFGRYMSKDCVVEPCRANLIDGYTEVKEKVKDM-VYGITISGSGPAIITIPKKE 269          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_METM5 (Homoserine kinase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=thrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 65/168 (38.69%), Postives = 88/168 (52.38%), Query Frame = -2
Query:  384 AFNEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNE 884
            A NE+F  KL   ELV      EA  +G  HADN+APAI GGF L  SY+PL++  L+ P   ++L  L  P  +  TK  R  LP E+ + + + N  +A  +V A+ N D    G+ +S D +VEP RA LI G             YG TISG+GP  + +   E
Sbjct:  107 ALNELFELKLSKLELVKYSSLGEAVAAGAPHADNVAPAIFGGFTLTTSYDPLEV--LHIPVDIEVLVAL--PNIQVSTKTAREILPKEIPIKYMVNNVGKAAGMVYALYNNDLELFGRYMSKDCVVEPCRANLIDGYAEVKEKVKDL-VYGITISGSGPAIITIPKKE 269          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_METVS (Homoserine kinase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=thrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 61/166 (36.75%), Postives = 86/166 (51.81%), Query Frame = -2
Query:  384 NEMFGNKLLPDELVLAGLESEAKVSGY-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNE 878
            NE+F  KL   +LV      EA  +G  HADN+APAI GGF L  +YEPL+++ +      ++  ++  P  +  TK  R  LP EV M   + N  +A  ++ A+ N D    G+ +S D +VEP RA LI G             YG TISG+GP  +A+   E
Sbjct:  110 NELFELKLSKLDLVKYASLGEAVAAGAPHADNVAPAIFGGFTLTTNYEPLEVLHIPV----EIDVIVALPNIQVSTKSAREILPKEVPMKSMVNNVGKAAGMIYALYNNDLDLFGQYMSKDAVVEPCRAQLITGYLEIKEKLKDL-VYGVTISGSGPAIIAIPKKE 270          
BLAST of FC878772 vs. ExPASy Swiss-Prot
Match: KHSE_METJA (Homoserine kinase OS=Methanocaldococcus jannaschii GN=thrB PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 61/170 (35.88%), Postives = 89/170 (52.35%), Query Frame = -2
Query:  384 AFNEMFGNKLLPDELVLAGLESEAKVSGY---HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAALPAEVGMPHHIWNCSQAGALVAAVLNGDPVGLGKALSSDKIVEPKRAPLIPGMXXXXXXXXXAGAYGCTISGAGPTAVAVVDNE 884
            A NE+F  KL  D+L L    S  +++     HADN+APAI GGF ++ +YEPL+++ +    K  +L  +  P     TK+ R  LP  VG+   + N  +A  +V A+ N D    G+ + SDK++EP R  LIP              YG TISG+GP+ +A    E
Sbjct:  104 AINELF--KLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHIPIDFKLDILIAI--PNISINTKEAREILPKAVGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGKLIPNYFKIKEEVKDK-VYGITISGSGPSIIAFPKEE 268          
The following BLAST results are available for this feature:
BLAST of FC878772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
KHSE_PROVI4.522e-2941.75Homoserine kinase OS=Prosthecochloris vibrioformis... [more]
KHSE_CHLPD7.713e-2940.29Homoserine kinase OS=Chlorobium phaeobacteroides (... [more]
KHSE_CHLTE5.528e-2737.98Homoserine kinase OS=Chlorobium tepidum GN=thrB PE... [more]
KHSE_CHLT31.231e-2638.05Homoserine kinase OS=Chloroherpeton thalassium (st... [more]
KHSE_CHLPB3.033e-2540.11Homoserine kinase OS=Chlorobium phaeobacteroides (... [more]
KHSE_PYRHO5.011e-2037.77Homoserine kinase OS=Pyrococcus horikoshii GN=thrB... [more]
KHSE_METMP8.548e-2039.29Homoserine kinase OS=Methanococcus maripaludis GN=... [more]
KHSE_METM58.548e-2038.69Homoserine kinase OS=Methanococcus maripaludis (st... [more]
KHSE_METVS1.458e-1936.75Homoserine kinase OS=Methanococcus vannielii (stra... [more]
KHSE_METJA1.458e-1935.88Homoserine kinase OS=Methanocaldococcus jannaschii... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA1DF03FM1 IVIA1 Citrus clementina cDNA clone IC0AAA1DF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878772 ID=FC878772; Name=FC878772; organism=Citrus clementina; type=EST; length=885bp
TTTTTTTTTTTTTTTTTTTTTTTTTGCTCAACAAGTCTTAACATTCATCA
ACATCGAATTGGCTCGTATGATTGCTGCCAATCTACTTCAAAAACCAAAC
AATCATCAAAAAATTGATTCAGCATTCATTCATCTTCATCCATTGATTCA
GCATTCACCAAGCAAACCACACTCCATTCCGGTCTTATTAGCGAAGCAAT
CATCAAAAAATTTCTAAAACACATTCATTCATCTTCATATTTTCACATTC
ATCTGGGAGCCCGGACACTCCCAACAAGCCTGGCACCAACTCTATCCAAT
CTCTTAACCATAGACACCGCCTTCAAATTCCCTTCTTTCCAAAACGCCTC
CACCATCTTCTCTCCAATCACCTTCCCTTTCTCTTCATTATCCACTACCG
CCACCGCCGTGGGCCCGGCCCCGCTGATGGTGCACCCGTACGCTCCCGCC
TCAACTGCTACCTTCTTCACCGCCTCCATTCCCGGAATCAATGGGGCCCG
TTTTGGCTCCACAATCTTATCCGATGACAAGGCCTTCCCCAGCCCCACCG
GGTCCCCGTTCAACACTGCCGCCACCAACGCCCCCGCCTGGCTGCAGTTC
CAAATGTGGTGCGGCATCCCCACCTCCGCCGGCAACGCTGCCCGCATTTT
CTTGGTCGGCGCCTCGAATTCCGGAGTTACTAGAACAAAAAGAAGTTGCT
TTTTCTCAGGAAAATTTAGTCTCATCAAATCTAACGGCTCGTAACTACGA
ATCAAAACGAAACCACCCATGATCGCAGGAGCAATGTTATCGGCGTGGTA
ACCGGACACTTTAGCTTCCGATTCCAAGCCGGCGAGAACTAATTCATCCG
GGAGTAATTTATTTCCAAACATTTCGTTGAACGCT
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