FC878774

Overview
NameFC878774
Unique NameFC878774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6104 contig Ccv1_Contig6104:572..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: ANTR4_ARATH (Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.024e-44
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQ 323
            LA RA+VG+AEGVALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++KQ
Sbjct:  207 LAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEYIKQKKQ 313          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: PHT43_ORYSJ (Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILR 314
            L+ R ++G+AEGVALP+MNNMV RWFP+TER+ AV IAM GF  GN IGL+LSPI+MS+AGIFGPFVIFGL GFLWVLVW+SA S TP  + QIS +EL+YI R
Sbjct:  193 LSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHELDYITR 296          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: ANTR3_ARATH (Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.362e-25
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQ-KPLLMGNKHKPATVIHLS 377
            L +RA  GLAEGVA+P+M  +++RWFP  ERA AV I+M GF  GN +GL+L+P+++S  GI GPF++F   G LWV  W S  ++ P   P I++ EL  I   K  +P  +  K  P+  + LS
Sbjct:  194 LCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLRLLLS 319          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: PHT42_ORYSJ (Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.843e-23
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK 347
            LA+RA+ GLAEGVA P M+  + +WFP  ERA AV I+MGGF  GN I  + +PI+MS  G+ G F  F   G+LW+ VWL    S P     ISK EL+ IL  +    + G+K
Sbjct:  218 LAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSK 332          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: PHT44_ORYSJ (Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL 311
            L MRA +G+ EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+S+ G    F  FG  G +W  +W     S+P   P++SK E  YIL
Sbjct:  277 LVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYIL 379          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: ANTR2_ARATH (Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.577e-19
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK-HKPATVI 368
            L +RA +G+ EGVA+PAMNNM+++W P +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL    S+P   P +S+        E++K +L G+K  +P TVI
Sbjct:  227 LVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVI 341          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: ANTR1_ARATH (Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI 308
            L +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP L+ Q G    F  FG  G +W+ +WL+   S+P   P +   E + I
Sbjct:  198 LVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLI 299          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: S17A5_HUMAN (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL 332
            + +RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  I L LS I+         F  FG  G  W L+W+   S TP +H +IS YE EYIL   +  L
Sbjct:  165 IVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQL 274          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: S17A5_SHEEP (Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.942e-16
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL 332
            +A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++         F  FG+ G +W ++W+   S TP+ H  I+ YE EYIL   +  L
Sbjct:  165 VALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL 274          
BLAST of FC878774 vs. ExPASy Swiss-Prot
Match: PHT41_ORYSJ (Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    3 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI 308
            L  RA +G+ EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+   G    F  FG  G  W   W S   S+P   P IS  E + I
Sbjct:  215 LVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYSSPLEDPGISAEEKKLI 316          
The following BLAST results are available for this feature:
BLAST of FC878774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ANTR4_ARATH3.024e-4479.44Probable anion transporter 4, chloroplastic OS=Ara... [more]
PHT43_ORYSJ2.741e-3770.19Probable anion transporter 3, chloroplastic OS=Ory... [more]
ANTR3_ARATH5.362e-2544.44Probable anion transporter 3, chloroplastic OS=Ara... [more]
PHT42_ORYSJ3.843e-2346.96Probable anion transporter 2, chloroplastic OS=Ory... [more]
PHT44_ORYSJ1.157e-1942.72Probable anion transporter 4, chloroplastic OS=Ory... [more]
ANTR2_ARATH2.577e-1939.84Probable anion transporter 2, chloroplastic OS=Ara... [more]
ANTR1_ARATH3.484e-1639.22Sodium-dependent phosphate transport protein 1, ch... [more]
S17A5_HUMAN4.550e-1639.09Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
S17A5_SHEEP5.942e-1636.36Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1[more]
PHT41_ORYSJ1.014e-1540.20Probable anion transporter 1, chloroplastic OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA1DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA1DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878774 ID=FC878774; Name=FC878774; organism=Citrus clementina; type=EST; length=386bp
TGCTGGCAATGCGAGCTGTTGTTGGACTAGCAGAAGGTGTGGCTCTTCCT
GCGATGAACAATATGGTTGCAAGATGGTTTCCTCAAACAGAACGAGCTAG
GGCTGTTGCTATTGCAATGGGTGGATTTACATCTGGAAATGCAATAGGAC
TGGTGTTATCACCAATTCTCATGTCACAAGCTGGTATTTTTGGGCCATTT
GTAATTTTTGGATTATCTGGATTTCTATGGGTTTTGGTTTGGTTGTCTGC
AACATCAAGTACCCCTGATCGACATCCGCAGATATCAAAGTATGAGTTGG
AGTATATACTGAGAGAGAAACAGAAGCCCTTGCTGATGGGAAATAAACAT
AAGCCAGCAACAGTAATTCACCTTTCAAGCGGTTGC
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