FC878775

Overview
NameFC878775
Unique NameFC878775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length927
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5131 contig Ccv1_Contig5131:78..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878775 vs. ExPASy Swiss-Prot
Match: TTC15_HUMAN (Tetratricopeptide repeat protein 15 OS=Homo sapiens GN=TTC15 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.233e-25
Identity = 89/292 (30.48%), Postives = 140/292 (47.95%), Query Frame = 3
Query:  114 LQDLATRGSWRTIIDNVSRARS--------QSLLTQPHHHLTYLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 920
            L+ L +  +WR  +D   R  +          LLT        L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR ++ +  V  K+   L + L E              S++ W+ R   V+  +    L  K+Y +  +  +  I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  N A ++L   ++  A R + E +  D  + VA NN A+CL+YL
Sbjct:  384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK-VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYL 667          
BLAST of FC878775 vs. ExPASy Swiss-Prot
Match: TTC15_MOUSE (Tetratricopeptide repeat protein 15 OS=Mus musculus GN=Ttc15 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.220e-25
Identity = 94/292 (32.19%), Postives = 140/292 (47.95%), Query Frame = 3
Query:  114 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 920
            L+ L +  +WR  +D   R   A  Q       P  H T    L +  LAL+ KL  F  A+ E +   + +     YE YPH+YP R GSMVPFS+R L+A L   L N Q  LDR +  +  V  K+   L + L E              SV+ W+ R   VL  +    L  K+Y +  D     I      +P L+S +G I +Q+GD++ A+K F  VE++  +    DGL  ++    +V  N+A +YL   ++  A + + E +  D  + VA NN A+CL+YL
Sbjct:  446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR-VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVLAVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYL 729          
The following BLAST results are available for this feature:
BLAST of FC878775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TTC15_HUMAN4.233e-2530.48Tetratricopeptide repeat protein 15 OS=Homo sapien... [more]
TTC15_MOUSE7.220e-2532.19Tetratricopeptide repeat protein 15 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA33CG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878775 ID=FC878775; Name=FC878775; organism=Citrus clementina; type=EST; length=927bp
AACTCAACACCATGACGGAGTCGCCACCCGTCTGTCAAAACCCAAGCCGA
TTCACGGATCCGTTAACCAACGAATTCGGATCCTTGAACGACCTCGTACC
GGACCTCGCATCTCTCCAAGACCTCGCCACGCGCGGCTCCTGGCGCACAA
TCATCGACAATGTCTCACGCGCCCGCTCCCAGTCTCTCCTCACGCAACCC
CACCACCACCTCACTTATCTCGCCTACAACACCCTCGCATTAATGAAACT
ACGCCGCTTCGATGAAGCCCAACAAGAGCTCGACTCTCTCGAAGACTTTA
ACAGCTCCGGTTACCAATACGAAACATATCCTCATATTTACCCGAACCGG
ACCGGATCCATGGTTCCCTTCTCTCTCCGCTGGCTCTACGCGGTTCTTCC
GATTAAGTTATCGAACCGGCAAGTGGGTCTGGACCGGTTTTATGAATTGC
TTGATTTCGTGAGAGAAAAGTTGGCACGAAAACTAGCTGAGAAATTGGAA
GAATCGGTGAAATCGTGGAAGAAAAGAGAGATTTTTGTTTTGAATTGTTT
GATTGGGTATCATTTGAGTAGTAAAGAGTATAATGTTTGTTTTGATTTGA
TGAATGAATCGATTGGTCGAGGTAATGGTTTGGACCCGATTTTGGTTTCG
AAATTAGGGTTTATACAGATGCAAGTTGGGGATTTAGAGGGGGCAAAGAA
GTCGTTTAATCGAGTGGAGGAAATGTTAAACGAGGGGAAATTTGAGGATG
GGTTGCTGAGTGAAGTTGAGTTTAGGAACCTTGTCAGTAGAAATAAGGCA
TTGATTTATTTGGTGGGGAAAGATTATGTATCTGCGGTGAGAGAGTATGA
GGAGTGTATAGAGAGGGATTATAATGATATTGTGGCGATTAATAATAAGG
CGTTGTGTTTGATGTACTTGAGGGATT
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