FC878776

Overview
NameFC878776
Unique NameFC878776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878776_ssr34 microsatellite FC878776_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878776_ssr118 microsatellite FC878776_ssr118:118..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3945 contig Ccv1_Contig3945:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: DEGP7_ARATH (Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.013e-104
Identity = 187/233 (80.26%), Postives = 201/233 (86.27%), Query Frame = 1
Query:  139 ERLGS-ALAGVDSPVKEDMCMEVDPPLRENVATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            ERLGS A    +S +KED+C+E+DPPL E+VATA+DWR+AL KVVPAVVVLRTTACRAFDTE+AGASYATGF+VDKRRGIILTNRHVVKPGPVVAEAMFVNREEIP+YP+YRDPVHDFGFF YDPSA+QFL Y EIPLAPEAA VGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAA          PVIDWQGRAVALN          FFLPL+R
Sbjct:    6 ERLGSQASMATESVMKEDLCLEIDPPLTESVATAEDWRRALGKVVPAVVVLRTTACRAFDTESAGASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPIYPVYRDPVHDFGFFCYDPSAVQFLTYQEIPLAPEAASVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLQR 238          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: YH05_SCHPO (PDZ domain-containing protein C1685.05 OS=Schizosaccharomyces pombe GN=SPBC1685.05 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.045e-60
Identity = 113/197 (57.36%), Postives = 144/197 (73.10%), Query Frame = 1
Query:  244 WRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            W   +  VV ++V ++ +A R+FDTE+AG+  ATGFVV+K  G+IL+NRHVV PGP+ A A F+N EEI +YPIYRDPVHDFGFFRYDPS+I+F +  EI L+PE+A VG++IR++GND+GEK+SIL+ TLARLDR AP+Y  D YNDFNTFY QAA          PV+D  G AVALN          F+LPL+R
Sbjct:   67 WDNTIKNVVRSIVSIKGSALRSFDTESAGSFCATGFVVNKTLGLILSNRHVVSPGPISARASFINYEEIDIYPIYRDPVHDFGFFRYDPSSIRFHDVTEISLSPESAKVGIDIRIIGNDAGEKLSILSSTLARLDRPAPNYGIDNYNDFNTFYYQAASGTSGGSSGSPVLDISGAAVALNSGGSNSSASSFYLPLDR 263          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_PICGU (Pro-apoptotic serine protease NMA111 OS=Pichia guilliermondii GN=NMA111 PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.328e-51
Identity = 104/212 (49.06%), Postives = 134/212 (63.21%), Query Frame = 1
Query:  199 EVDPPLRENVATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            E+ P L         W+K + KVV +VV ++ +    FDTE++  S ATGFVVD  RG ILTNRHVV PGP     +F N EE  V PIYRDP+HDFGF ++DP  I+++  +++ L P+ A VG EIRVVGND+GEK+SILAG ++RLDR+AP Y    YNDFNT Y+QAA          PV++ +G AVAL           FFLP+ R
Sbjct:   53 EMSPQLENYFPQTTSWQKTITKVVKSVVSIQFSHVSNFDTESSAVSEATGFVVDSERGYILTNRHVVGPGPFCGYVVFDNHEEAVVRPIYRDPIHDFGFLQFDPKDIRYMKIEQLDLRPDLAQVGTEIRVVGNDAGEKLSILAGFISRLDRNAPDYGTLSYNDFNTEYIQAAASASGGSSGSPVVNKEGYAVALQAGGSTEASTDFFLPVYR 264          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_YARLI (Pro-apoptotic serine protease NMA111 OS=Yarrowia lipolytica GN=NMA111 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.959e-51
Identity = 107/226 (47.35%), Postives = 137/226 (60.62%), Query Frame = 1
Query:  157 LAGVDSPVKEDMCMEVDPPLRENVATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            L G+ SPV+    + +      +      W   + KVV +VV ++     +FD E+A  S ATGFVVD   GII+TNRHVV  GP    A+F N EE  + PIYRDPVHDFGF ++DPS I+++N  ++ L PE A VG EIRVVGND+GEK+SIL+G ++RLDR+AP Y    YNDFNT Y+QAA          PV+D  G A+AL           FFLPL R
Sbjct:   11 LNGLKSPVRSPKKIAMPAATSASNGVVAGWHSTIEKVVKSVVSIQFAQVASFDCESAVVSEATGFVVDTEMGIIMTNRHVVGAGPFCGYAVFDNHEECELVPIYRDPVHDFGFLKFDPSKIKYMNVQKLRLCPEKAQVGTEIRVVGNDNGEKLSILSGFISRLDRNAPDYGDLTYNDFNTEYIQAAASASGGSSGSPVVDIDGDAIALQAGGSTDASTDFFLPLNR 236          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_KLULA (Pro-apoptotic serine protease NMA111 OS=Kluyveromyces lactis GN=NMA111 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.865e-51
Identity = 111/243 (45.68%), Postives = 151/243 (62.14%), Query Frame = 1
Query:  121 KKRKMGERLGSALAGVDSPV--KEDMCMEVDPPLRENVATADD---WRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            KK+++   +    + VD  +  +ED     D P+    +  ++   W++ ++KVV +VV +  +    FD+EAA  S ATGF+VD + GIILTNRHVV PGP +  A+F N EE  V PIYRDPVHDFGF ++DPS ++++    + L P  A VG EIRVVGND+GEK+SIL+G ++RLDR+AP Y +  YNDFNT Y+QAA          PVI  +G AVAL           FFLPL+R
Sbjct:   22 KKQRVDNDVDQNTSSVDEDIDYEEDYDEVNDVPIDSGNSLFNNNAKWQETISKVVKSVVSIHFSQVAPFDSEAALVSEATGFIVDAKLGIILTNRHVVGPGPFIGYAIFDNHEECDVIPIYRDPVHDFGFLKFDPSKLKYIEVTALELKPSLAKVGSEIRVVGNDAGEKLSILSGFISRLDRNAPDYGELTYNDFNTEYIQAAAAASGGSSGSPVITVEGYAVALQAGGSSEASTDFFLPLDR 264          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_VANPO (Pro-apoptotic serine protease NMA111 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NMA111 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.048e-51
Identity = 109/221 (49.32%), Postives = 139/221 (62.90%), Query Frame = 1
Query:  190 MCMEVDPPLRENVATADD------WRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            M  EVD  +  N+++  D      W+  + KVV +VV +  +    FD++ A  S ATGFVVD   GIILTNRHVV PGP V  A+F N EE  V PIYRDPVHDFGF ++DP+ I+++N   + L P  A VG EIRVVGND+GEK+SIL+G ++RLDR+AP Y +  YNDFNT Y+QAA          PV++  G AVAL           FFLPL+R
Sbjct:   38 MVEEVDSEIPVNISSYGDAETYLKWQNTIAKVVKSVVSIHFSQVAPFDSDNAVVSQATGFVVDASLGIILTNRHVVGPGPFVGYAVFDNHEECDVTPIYRDPVHDFGFLKFDPTKIKYMNIQALELKPSLAKVGSEIRVVGNDAGEKLSILSGFISRLDRNAPDYGELTYNDFNTEYIQAAAAASGGSSGSPVVNSDGYAVALQAGGSTEASTDFFLPLDR 258          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_DEBHA (Pro-apoptotic serine protease NMA111 OS=Debaryomyces hansenii GN=NMA111 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.581e-50
Identity = 101/202 (50.00%), Postives = 134/202 (66.34%), Query Frame = 1
Query:  229 ATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            A ++ W++ + KVV +VV ++ T    FDTE++  S ATGFVVD +RG+ILTNRHVV PGP     +F N EE  V PIYRDPVHDFGF ++D  +I++++  ++ L P+ A VG EIRVVGND+GEK+SILAG ++RLDR+AP Y    YNDFNT Y+QAA          PV++  G AVA+           FFLP+ R
Sbjct:   56 ANSNQWQETITKVVKSVVSIQFTHVSNFDTESSIVSEATGFVVDAKRGLILTNRHVVGPGPFCGYVVFDNHEEAVVKPIYRDPVHDFGFLQFDAKSIKYMDVTQLELKPDLAKVGTEIRVVGNDAGEKLSILAGFISRLDRNAPDYGALTYNDFNTEYIQAAASASGGSSGSPVVNEDGHAVAIQAGGSSEASTDFFLPVYR 257          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_PICST (Pro-apoptotic serine protease NMA111 OS=Pichia stipitis GN=NMA111 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.520e-50
Identity = 102/199 (51.26%), Postives = 128/199 (64.32%), Query Frame = 1
Query:  238 DDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            + W++ + KVV AVV ++ T    FDTE +  S ATGFVVD  RG+ILTNRHVV PGP     +F N EE  V PIYRDPVHDFGF ++DP  +++L   ++ L P+ A VG EIRVVGND+GEK+SILAG ++RLDR+AP Y    YNDFNT Y+QAA          PV++  G  VAL           FFLP+ R
Sbjct:   57 NQWQETITKVVNAVVSIQFTHVSNFDTETSLVSEATGFVVDATRGLILTNRHVVGPGPFCGYVVFDNHEEAVVKPIYRDPVHDFGFLQFDPKEVKYLQLTQLELKPDLAKVGTEIRVVGNDAGEKLSILAGFISRLDRNAPEYGSLTYNDFNTEYIQAAASASGGSSGSPVVNEDGDVVALQAGGSTEASTDFFLPIYR 255          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: YIFC_SCHPO (PDZ domain-containing protein C23G3.12c OS=Schizosaccharomyces pombe GN=SPAC23G3.12c PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.624e-49
Identity = 95/203 (46.80%), Postives = 134/203 (66.01%), Query Frame = 1
Query:  226 VATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            +A +  W++++ +VV +VV +R +   AFDT+ +G   A+ FVVD + G +LTNRHVV  GP V  A+F N EE+ V+P+YRDPVHDFGF R+DP  I+++N +++ L P+ A VG EIRVVGND+ EK+SILAG ++R+DR+ P Y +  Y DFNT Y+QAA          PV++  G  VAL           +FLPL+R
Sbjct:   46 IAESKKWKESIARVVKSVVSIRFSQVAAFDTDESGTGEASAFVVDAKNGYMLTNRHVVCAGPFVGHAVFDNHEEVEVFPVYRDPVHDFGFLRFDPKKIRYMNVEQLELRPDLAKVGTEIRVVGNDAAEKLSILAGWISRIDRNVPDYGELTYCDFNTNYIQAAANASGGSSGSPVVERNGNVVALQAGGHMIAATDYFLPLDR 248          
BLAST of FC878776 vs. ExPASy Swiss-Prot
Match: NM111_LODEL (Pro-apoptotic serine protease NMA111 OS=Lodderomyces elongisporus GN=NMA111 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.624e-49
Identity = 99/202 (49.01%), Postives = 129/202 (63.86%), Query Frame = 1
Query:  229 ATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAXXXXXXXXXXPVIDWQGRAVALNXXXXXXXXXXFFLPLER 834
            + +D W+  + KVV +VV ++ +   AFDTE A  S ATGFVVD  RG+ILTNRHVV PGP     +F N E + V PIYRDPVHDFGF ++D   +++L   ++ L P  A +G EIRVVGND+GEK+SILAG ++R+DR+AP Y    YNDFNT Y+QAA          PV++  G+ VAL           FFLP+ R
Sbjct:   54 SNSDKWQSTIRKVVNSVVSIQFSHVAAFDTETALVSEATGFVVDAERGLILTNRHVVGPGPFTGYVVFDNHESVDVKPIYRDPVHDFGFLQFDTKDVKYLKLTQLDLDPSLAKIGTEIRVVGNDNGEKLSILAGIISRIDRNAPDYGALTYNDFNTEYIQAAASATGGSSGSPVVNEDGKCVALQAGGSTEASTDFFLPVSR 255          
The following BLAST results are available for this feature:
BLAST of FC878776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DEGP7_ARATH3.013e-10480.26Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP... [more]
YH05_SCHPO2.045e-6057.36PDZ domain-containing protein C1685.05 OS=Schizosa... [more]
NM111_PICGU1.328e-5149.06Pro-apoptotic serine protease NMA111 OS=Pichia gui... [more]
NM111_YARLI2.959e-5147.35Pro-apoptotic serine protease NMA111 OS=Yarrowia l... [more]
NM111_KLULA3.865e-5145.68Pro-apoptotic serine protease NMA111 OS=Kluyveromy... [more]
NM111_VANPO5.048e-5149.32Pro-apoptotic serine protease NMA111 OS=Vanderwalt... [more]
NM111_DEBHA5.581e-5050.00Pro-apoptotic serine protease NMA111 OS=Debaryomyc... [more]
NM111_PICST9.520e-5051.26Pro-apoptotic serine protease NMA111 OS=Pichia sti... [more]
YIFC_SCHPO1.624e-4946.80PDZ domain-containing protein C23G3.12c OS=Schizos... [more]
NM111_LODEL1.624e-4949.01Pro-apoptotic serine protease NMA111 OS=Lodderomyc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878776 ID=FC878776; Name=FC878776; organism=Citrus clementina; type=EST; length=834bp
ACTTGACTCAGCAGTTAAATCCTCTCTCACTCACTCTCTCTCTCTCAAAT
CTCTGACAATTCAGAAAAAAAAGCCAAACCCTAAAACTTTCCCGAGAAAA
TTTTAGAACATACAAACGAAAAGAAAAGAAAAATGGGAGAACGCTTGGGA
AGTGCGCTGGCGGGGGTTGATTCGCCCGTGAAGGAGGATATGTGCATGGA
GGTAGACCCTCCGTTGCGAGAAAATGTAGCCACCGCCGACGACTGGCGTA
AGGCTCTTAACAAAGTGGTCCCCGCCGTCGTCGTTCTCCGAACCACCGCG
TGTCGCGCCTTCGATACCGAGGCCGCCGGTGCTAGTTACGCCACCGGCTT
CGTCGTTGACAAGCGCCGTGGCATCATCTTGACTAATCGCCACGTCGTCA
AGCCAGGACCTGTAGTTGCAGAGGCTATGTTTGTTAACAGAGAAGAAATT
CCAGTGTATCCTATATATAGAGATCCAGTTCATGATTTTGGTTTCTTTCG
CTATGATCCAAGTGCAATACAGTTTCTTAACTACGATGAGATTCCTCTTG
CTCCTGAAGCTGCTTGTGTTGGACTTGAAATCAGGGTTGTCGGTAATGAC
AGTGGTGAGAAGGTTTCAATTTTGGCAGGCACTCTTGCTCGTTTAGATAG
AGATGCTCCTCACTACAAGAAGGATGGCTATAACGATTTCAATACATTTT
ACATGCAAGCAGCATCTGGGACTAAGGGTGGGTCAAGCGGTTCTCCAGTT
ATTGATTGGCAAGGCAGGGCAGTGGCCTTGAATGCTGGTAGCAAGTCATC
TAGTGCATCGGCATTTTTTTTACCTTTGGAACGA
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