FC878810

Overview
NameFC878810
Unique NameFC878810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2906 contig Ccv1_Contig2906:109..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878810 vs. ExPASy Swiss-Prot
Match: PUB62_ARATH (U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.644e-21
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 2 
Query:  533 NQQNFGKIGNAGQN-VNNGAIVTVAEADSDVYYSQYLQQGTEXXXXXXQKECVAVDNGCGISGSGD----------SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTWSRPVLE 877
            N+ + G   +AG++ V+ GA++ V + D+  YYSQ+ +          ++  +A DNGC  SG  D          SLR ILSDP TG+LM DAMILPCGH+FGA G++ V +MKAC T S+PV E
Sbjct:  106 NEGDIGMNKDAGEDSVSAGAVIVVGQ-DNAAYYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSE 230
[Close]
BLAST of FC878810 vs. ExPASy Swiss-Prot
Match: PUB63_ARATH (U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.111e-14
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 2 
Query:  719 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTWSRPVLE 877
            S +SL+AILSDPVTG LM+DA ILPCGHSFGA G++ V +MKAC+T S+P LE
Sbjct:  198 SWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLE 250
The following BLAST results are available for this feature:
BLAST of FC878810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB62_ARATH7.644e-2144.44U-box domain-containing protein 62 OS=Arabidopsis ... [more]
PUB63_ARATH3.111e-1469.81U-box domain-containing protein 63 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA74DF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878810 ID=FC878810; Name=FC878810; organism=Citrus clementina; type=EST; length=878bp
TTAAAACCCTAAAAATCTCCACTCTCACCTAGAAATTCCCCAAATTAACC
TCTCAAATCCGATTAATTCATCAATGTCGTCTGACGAAATCGCGCTAAAC
GGTCTAAATACTCAGCTCGTCTTTCAAGACGACCCCTTGCGGTCGTTCAA
TTGCCAGCAGCACCGGGTCGGAGATCCGGGTCCCAAGACTCGAGAACTCA
CCGGGTTCATCGACGACAAGATGTTCTCCGTCGACCGCGACCGCTATTTT
CGACCTCAACCGACGATGTTCACCGAACACCACCCTGAACGTCGCGATCC
ACCGCAGGCTCGTGAATGGAGCGGAAACGCCACTTCACCCAGCACCGACG
AGTCGGACGGCGAAGACGACGATGTTGACGACGATGAAGACGATGATGAC
GTCGATGAAGCTGAAAAAAATAACAACCACAATAGTAATAGCAATGTTAC
GAATTGTAATAATAACAATAATAGTACGAACTGTGGTATTTTGACAGCAG
GGGTTGAAAAAATGGGAAATGGGAAAGCGAAGAATCAACAGAATTTTGGA
AAGATTGGTAATGCCGGGCAAAATGTTAACAATGGTGCAATTGTTACGGT
GGCGGAAGCAGATAGTGACGTGTATTACTCCCAGTATTTGCAGCAGGGGA
CTGAAGGTTCATCTGGGTCTGGGCAGAAAGAGTGTGTTGCAGTGGATAAT
GGGTGTGGTATTAGTGGGTCCGGGGACTCGCTAAGGGCAATTTTGTCTGA
TCCTGTCACGGGAAATCTCATGGATGATGCAATGATATTACCTTGTGGAC
ATTCTTTTGGAGCTGCTGGAGTGCAGCATGTTATTAGAATGAAAGCATGC
TATACCTGGTCACGGCCAGTTTTAGAGG
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