FC878813

Overview
NameFC878813
Unique NameFC878813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11586 contig Ccv1_Contig11586:68..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 89/216 (41.20%), Postives = 123/216 (56.94%), Query Frame = 1
Query:  232 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 873
            +HGG  +  +  +ATFT    E     FAGE         YSR  NPT+  L  +MA+LEG EA    ASGM AI+S L  L   G  V+   TLYG T A L H       +    VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P +  P  LGAD+VVHS +K++SG  DI AG V G   LV+
Sbjct:   23 DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGH----FYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVD 232          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 82/220 (37.27%), Postives = 125/220 (56.82%), Query Frame = 1
Query:  229 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMG 885
            GEHG    ++  ++++           FAGE+  +    +YSR+ NPTV     ++AALEG E A  TASGMSAI +++M LCSSG HV+ +R+++G T +L   +F R   I   +  +SD     +A  +  TK+ + ES SNP   + +I  L+ +AH KG  + VDN F +P +  P +LGADVV+HS +K+I G    + G V G    +  ++G
Sbjct:   34 GEHGE---ALFTTSSYVFRTAADAAARFAGEVPGN----VYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYFKR-FGIQVDYPPLSDLAAWEAA-CKPNTKLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVG 244          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 8.146e-29
Identity = 68/184 (36.96%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  343 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMGLH 891
            F Y R+ NPT + L  +++ALEG E+    ASGM A + +L+ L  +GGH+V     Y  T   + +F P+   IT T +D +D   + +A+ + +  + + ES +NP L   +I  +S++ H +G  V +D TF +PL      LGAD+VVHS +K+I G  D++AG +CG   LV+ +  LH
Sbjct:  224 FEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPK-LGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLH 406          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.007e-28
Identity = 77/207 (37.20%), Postives = 119/207 (57.49%), Query Frame = 1
Query:  235 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            HGG+    +  A +  + +  T ++  AG+       + YSR  NPT   L   +  LE  EA Y  +SGM+AI++V+M L +SG HVV    +YGGT+ ++T    R   I +TFVD S  E V  AI +  TK +Y E+ +NP L + ++  ++ +A   GV ++VDNTF +P    P  LGAD+V+HS +K++ G +D++ G V
Sbjct:    9 HGGITGDEKTGAVSVPIYQVSTYKQPKAGQ----HTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNRL-GIESTFVDTSSREEVEKAI-RPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLV 208          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.218e-26
Identity = 72/213 (33.80%), Postives = 117/213 (54.93%), Query Frame = 1
Query:  271 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMGLHQGAL 903
            T  VM P      +A +       + YSR  NPT     R +A LE  +  +  ASGM+A +++L +L   G HVV    +YGG++ L  +   R+  ++ +FVD +D   V  A+   +TK+L+ ES SNP L + ++ +++ +A +K +  V DNTF +P++  P  LG D+V HS +K+++G +DII G AV G    +   +   Q A+
Sbjct:   26 TGAVMTPIYTASTYAQKSPGVHQGYEYSRSQNPTRFAYERCVADLESGQHGFAFASGMAATATIL-ELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREAVT-AKTKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAI 236          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.942e-26
Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 1
Query:  229 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG 843
            G  G V++ I+ ++TF     E        E G     + YSR   PT   L   +AALEG    +  +SGM+AIS+  + L S G HV+    +YGGT  ++T    R   I  TFVD++D   V  +I +  TKV+Y E+ SNPTL + +I  + +LA + G    +DNTF +P +  P  LG D+V+HS +KF+SG +D+++G
Sbjct:   21 GGTGAVSVPIQHASTFHQSSFE--------EFGA----YDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFL-LLSQGDHVLVTEDVYGGTFRMVTEVLTRF-GIEHTFVDMTDRNEVARSI-KPNTKVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLSG 211          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.942e-26
Identity = 77/205 (37.56%), Postives = 114/205 (55.61%), Query Frame = 1
Query:  238 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            G VN+ I AS+TF               +G  R  F Y+R  NPT   L   +AA+E    A   +SGM+A    L  +   G HVV     YGGT  L+   F R  ++  T V ++D + V +AI   RT++++ E+ +NP L++A+I  ++ L  D+   V+VDNTF SP +  P RLGADVV+HS +K+I G +D++ GA+
Sbjct:   30 GAVNVPIYASSTFA-----------QDGVGGLRGGFEYARTGNPTRAALEASLAAVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTR-WDVQYTPVRLADLDAVGAAITP-RTRLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGAL 221          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.942e-26
Identity = 77/205 (37.56%), Postives = 114/205 (55.61%), Query Frame = 1
Query:  238 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            G VN+ I AS+TF               +G  R  F Y+R  NPT   L   +AA+E    A   +SGM+A    L  +   G HVV     YGGT  L+   F R  ++  T V ++D + V +AI   RT++++ E+ +NP L++A+I  ++ L  D+   V+VDNTF SP +  P RLGADVV+HS +K+I G +D++ GA+
Sbjct:   30 GAVNVPIYASSTFA-----------QDGVGGLRGGFEYARTGNPTRAALEASLAAVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTR-WDVQYTPVRLADLDAVGAAITP-RTRLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGAL 221          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: CYSD_EMENI (O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans GN=cysD PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.453e-25
Identity = 69/170 (40.59%), Postives = 97/170 (57.06%), Query Frame = 1
Query:  346 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            IYSR  NPTV    +++AALEG  AA   +SG +A    +  L  +G ++V+   LYGGT+      FPR   ITT FV     E + +A +  RTK +Y E+I NP   V +   ++++AH+KG+ +VVDNTF      + P   GAD+VVHS +K+I G    I G V
Sbjct:   57 IYSRIMNPTVDVFEKRIAALEGGVAAVAASSGQAAQFMAISALAHAGDNIVSTSNLYGGTYNQFKVLFPR-LGITTKFVQGDKAEDI-AAAIDDRTKAVYVETIGNPRYNVPDFEVIAKVAHEKGIPLVVDNTFGAGGYFVRPIEHGADIVVHSATKWIGGHGTTIGGVV 224          
BLAST of FC878813 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.137e-25
Identity = 71/196 (36.22%), Postives = 111/196 (56.63%), Query Frame = 1
Query:  265 SATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV 849
            S T  V+ P      +A     D   + YSR  NPT   L   +AALE  + A   ASG+ A S+ LM +  +G HV+    +YGGT+ L          ++  F+D++D E V +AI +  T++++ E+ +NP L +A I  ++R+A + G+  +VDNTF SP    P  LGAD+V+HS +K+I G +D++ GA+
Sbjct:   18 SVTGAVIVPIYQTSTYAQRGVGDHTGYEYSRTDNPTRTALQTCLAALEEAKHALVFASGLGA-STTLMLMLKAGDHVICGDDVYGGTYRLFQRVMTEH-GLSFDFIDMADPEAVRAAI-KPNTRLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFASPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAI 210          
The following BLAST results are available for this feature:
BLAST of FC878813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
MEGL_PSEPU1.754e-3141.20Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METZ_PSEAE2.290e-3137.27O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METB_ARATH8.146e-2936.96Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
MCCB_BACSU9.007e-2837.20Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METC_COXBU2.218e-2633.80Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
METC_BACSU4.942e-2637.38Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
METB_MYCTU4.942e-2637.56Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO4.942e-2637.56Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
CYSD_EMENI2.453e-2540.59O-acetylhomoserine (thiol)-lyase OS=Emericella nid... [more]
METB_HERAU7.137e-2536.22Probable cystathionine gamma-synthase (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878813 ID=FC878813; Name=FC878813; organism=Citrus clementina; type=EST; length=912bp
ACCAATACATATTGATCATCAGCCTAGAATTAGATCCTCGAATATAAAAA
AAAAAAAAAAATTAAAGATCAAATGGCCGAATGCTTTGTGCTATCTAGCA
AGAAAAGATCGGCGGGGACGGAGGAAACCGACGGCGATGATCTTTATAAG
ACGAAGAAATCAATGTTATCGACTGCAGCAGCATGGGAGGACCCTGCTGC
TGCATTAGCCAGTGCCAGGCATGAGTTTGGTGAACACGGTGGCGTTAACA
TGTCCATCGAAGCCTCTGCCACCTTCACTGTCATGGAGCCCGAGACCATG
CGCCGCATGTTCGCCGGCGAGCTTGGCCCCGACCGTGATTTCTTCATCTA
CAGCCGTCACTTTAACCCCACTGTCTTAAATCTCAGCCGTCAGATGGCGG
CTCTCGAAGGAACCGAGGCCGCTTATTGCACCGCCAGCGGTATGTCTGCA
ATTTCGTCCGTATTGATGCAACTATGCAGCAGTGGAGGACACGTGGTGGC
AGCGCGTACACTCTATGGCGGGACTCATGCTTTGCTGACCCACTTTTTCC
CGAGGGCTTGCAACATAACGACGACGTTCGTCGACATCAGCGATCACGAG
ATGGTGAATAGTGCAATTGTTCAAGGAAGGACAAAGGTGCTGTACTTTGA
GTCCATCTCTAACCCTACGCTCGCCGTGGCTAATATCCCCGAGCTGAGCC
GTTTGGCTCACGATAAGGGAGTTACCGTCGTGGTGGATAACACATTTTCT
CCACTGGTTCTGTCGCCGGCTCGGCTCGGAGCTGACGTCGTTGTGCACAG
CATCTCCAAGTTTATCAGTGGTGGGGCCGATATCATTGCAGGTGCTGTTT
GTGGGCCAGCGAACCTTGTGAACTCTATGATGGGACTTCACCAAGGAGCC
TTGATGCTGTTG
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