FC878817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN6_ARATH (Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2) HSP 1 Score: 352.443 bits (903), Expect = 2.057e-96 Identity = 190/314 (60.51%), Postives = 215/314 (68.47%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFFK-GGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSINTPAPLHDY---------HYNSNNEIVFW------------GSATSP-RLSNYAFLGCLLAAAYATRLQLNEMD 916 MITGN+FY VMCAM PLYFAM +AYGSVKW +IFTP QCSGINRFV+VFAVPVLSFHFI+QNNPY+MDT FILADT WA+FFK GGLDWLITLFS+ATLPNTLVMGIPLL AMYG++TQ+LMVQLVVLQCIIWYTLLLFLFE RAA +LI+ +FPG AA SIAK ++D+DVISLDG DPL+TE+ETD NG +CLTPRASNLSNAEIFS+NTP + YN +NEI+F G SP RLS YA NE+D Sbjct: 1 MITGNEFYTVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNAEIFSVNTPNNRFFHGGGGSGTLQFYNGSNEIMFCNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQPTPRASNFNELD 314
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 1.874e-73 Identity = 155/293 (52.90%), Postives = 183/293 (62.46%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWA-IFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESE--TDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSINT---PAPL-----HDYHY---------NSN---NEIVFWGSATSPRLSNY 853 MIT DFY VM AMVPLY AM++AYGSVKWW+IFTP QCSGINRFVA+FAVP+LSFHFIA NNPY M+ +F+ AD+ W + G LDW ITLFS++TLPNTLVMGIPLL MYG F+ LMVQ+VVLQCIIWYTL+LFLFEYR A +LI QFP A SI +D+D++SLDGR PL+TE+E DG + TPR SNL+NAEI+S+ + P P H Y NSN E VF +PR SNY Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIAANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFP-DTAGSIVSIHVDSDIMSLDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMASGGGRNSNFGPGEAVFGSKGPTPRPSNY 292
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2) HSP 1 Score: 273.092 bits (697), Expect = 1.586e-72 Identity = 144/272 (52.94%), Postives = 186/272 (68.38%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFFK-GGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSIN-TPAPLHDYHYNSNNEIVFWGSATSPRLSNY 853 MIT +D Y V+ A++PLY AM++AYGSV+WW+IF+P QCSGINRFVA+FAVP+LSFHFI+ NNPY M+ +FI ADT WA F + G L+W IT+FS++TLPNTLVMGIPLL AMYGE++ SLMVQ+VVLQCIIWYTLLLFLFEYR A +LI QFP ASI F++++DV+SLDG D L+T+++ +G +TPR SNL+ AEI+S+N TP + H + + + F G RLSN+ Sbjct: 1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISSNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFP-ETGASIVSFKVESDVVSLDGHDFLETDAQIGDDGKLHVTVRKSNASRRSFYGGGGTNMTPRPSNLTGAEIYSLNTTPRGSNFNHSDFYSMMGFPGG----RLSNF 267
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 7.872e-72 Identity = 143/246 (58.13%), Postives = 172/246 (69.92%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWA-IFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDG-RDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXI---CLTPRASNLSNAEIFSINT 766 MITG DFY VM AMVPLY AM++AYGSVKWWRIFTP QCSGINRFVA+FAVP+LSFHFI+ NNPY M+ +FI ADT W+ + +G L+W ITLFS++TLPNTLVMGIPLL MYGEF+ SLMVQ+VVLQCIIWYTL+LF+FEYR A +LI QFP A A IA +D DV+SLDG RD ++TE+E +G + TPR SNL+NAEI+S+ + Sbjct: 1 MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGA-IASIVVDADVVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMGFSSTTPRPSNLTNAEIYSLQS 245
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 1.754e-71 Identity = 153/291 (52.58%), Postives = 187/291 (64.26%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWA-IFFKGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDG-RDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXI---CLTPRASNLSNAEIFSINT---PAPL-----HDYHYNSNNEIVFWGSA--------TSPRLSNY 853 MIT DFY VM AMVPLY AM++AYGSVKWWRIFTP QCSGINRFVA+FAVP+LSFHFI+ NNPY M+ +FI ADT W+ + +G L+W ITLFS++TLPNTLVMGIPLL MYGEF+ SLMVQ+VVLQCIIWYTL+LF+FEYR A +LI QFP AA+IA +D DV+SLDG RD ++TE+E +G + TPR SNL+NAEI+S+ + P P H Y+ +G+A +PR SNY Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFP-DTAANIASIVVDPDVVSLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVGRSSNFGAADAFGVRTGATPRPSNY 290
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 5.103e-71 Identity = 144/272 (52.94%), Postives = 187/272 (68.75%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFFK-GGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSIN-TPAPLHDYHYNSNNEIVFWGSATSPRLSNY 853 MI+ +D Y V+ A++PLY AM++AYGSV+WW+IF+P QCSGINRFVA+FAVP+LSFHFI+ NNPY M+ +FI ADT WA F + G L+W IT+FS++TLPNTLVMGIPLL AMYGE++ SLMVQ+VVLQCIIWYTLLLFLFE+R A +LI QFP AASI F++++DV+SLDG D L+T++E +G +TPR SNL+ AEI+S++ TP + H + N + F G RLSN+ Sbjct: 1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFP-ETAASIVSFKVESDVVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSFCGPN---MTPRPSNLTGAEIYSLSTTPRGSNFNHSDFYNMMGFPGG----RLSNF 264
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 9.623e-70 Identity = 142/272 (52.21%), Postives = 185/272 (68.01%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFFK-GGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSI-NTPAPLHDYHYNSNNEIVFWGSATSPRLSNY 853 MIT +D Y V+ A+VPLY AM++AYGSV+WW+IF+P QCSGINRFVA+FAVP+LSFHFI+ N+PY M+ +F+ ADT WA K G L+W+IT+FS++TLPNTLVMGIPLL AMYG + SLMVQ+VVLQCIIWYTLLLFLFEYR A +LI QFP ASI F++++DV+SLDG D L+T++E +G + +TPR SNL+ AEI+S+ +TP + H + + + F G RLSN+ Sbjct: 1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFP-ETGASIVSFKVESDVVSLDGHDFLETDAEIGNDG------KLHVTVRKSNASRRSLMMTPRPSNLTGAEIYSLSSTPRGSNFNHSDFYSVMGFPGG----RLSNF 261
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 4.776e-69 Identity = 143/279 (51.25%), Postives = 181/279 (64.87%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFF-KGGLDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNG--------XXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSINT---PAPLHDYHYNSNNEIVFWGS-ATSPR 841 MITG D Y V+ AMVPLY AM++AYGSV+WW IFTP QCSGINRFVAVFAVP+LSFHFI+ N+PY M+ F+ AD+ W F +G L+W+ITLFS++TLPNTLVMGIPLL AMYG+F+ +LMVQ+VVLQ IIWYTL+LFLFE+R A +LI QFP A SI F +D+DVISL+GR+PL+T++E +G +TPRASNL+ EI+S+ + P P ++ +F S A SPR Sbjct: 1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSLEWMITLFSLSTLPNTLVMGIPLLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFP-ETAGSITSFRVDSDVISLNGREPLQTDAEIGDDGKLHVVVRRSSAASSMISSFNKSHGGGLNSSMITPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPR 278
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 2.621e-67 Identity = 140/293 (47.78%), Postives = 179/293 (61.09%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWAIFFK-----GG----LDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXI------------CLTPRASNLSNAEIFSINT---PAPLHDYHYNSNNEIVFWGSATSPRLSN 850 MITG D Y V+ A+VPLY AM +AYGSV+WW IFTP QCSGINRFVAVFAVP+LSFHFI+ N+PY M+ +F+ AD+ W GG LDW ITLFS++TLPNTLVMGIPLL AMYG+F+ SLMVQ+VVLQ +IWYTL+LFLFEYR A LI QFP ASIA F +D+DV+SL+GR+ L+ ++E +G +TPRASNL+ EI+S+ T P P ++ +F GS + ++++ Sbjct: 1 MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISTNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNGGAAASLDWTITLFSLSTLPNTLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNGREALQADAEVGRDGRVHVVIRRSASASTTGGGGGAARSGVSRAYGASNAMTPRASNLTGVEIYSLQTSREPTPRASSFNQADFYAMFSGSKMASQMAS 293
BLAST of FC878817 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.453e-65 Identity = 134/245 (54.69%), Postives = 170/245 (69.39%), Query Frame = 2 Query: 44 MITGNDFYKVMCAMVPLYFAMLIAYGSVKWWRIFTPQQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTXXXXXXXXXXXXWA-IFFKGG---LDWLITLFSVATLPNTLVMGIPLLSAMYGEFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATVLIQTQFPGPAAASIAKFELDNDVISLDGRDPLKTESETDGNGXXXXXXXXXXXXXXXXXXXXXICLTPRASNLSNAEIFSINT 766 MI+G+DFY VM A+VPLY AM +AYGSV+WW IFTP QCSGINRFVA+FAVP+LSFHFI+ N+PY M+ +F+ ADT W+ + + G LDW ITLFS++TLPNTLVMGIPLL AMYG ++ SLMVQ+VVLQCIIWYTL+LFLFE+RAA +LI QFP AASI +D DV+SL+G +TE+E +G + +TPR SNL+ AEI+S+++ Sbjct: 1 MISGHDFYTVMAAVVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFLAADTLQKLLVLAGLAAWSRLPSRTGAPRLDWSITLFSLSTLPNTLVMGIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFP-DTAASIVSLHVDPDVVSLEG-GHAETEAEVAADG------RLHVTVRRSSVSRRSLLVTPRPSNLTGAEIYSLSS 237 The following BLAST results are available for this feature:
BLAST of FC878817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878817 ID=FC878817; Name=FC878817; organism=Citrus clementina; type=EST; length=927bpback to top |