FC878822

Overview
NameFC878822
Unique NameFC878822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length233
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10573 contig Ccv1_Contig10573:1..233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878822 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.555e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -2 
Query:   89 IHRFIVASRPGSARNYQLPAMGFPPKQLTDIDQKGEQGGIGNSVVIQK 232
            +  FI ASRPG ++ YQL  MGFPPKQLT++DQ  EQ GI N+VVIQK
Sbjct:  373 VRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQK 420
The following BLAST results are available for this feature:
BLAST of FC878822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBAX1_ARATH7.555e-1164.58UBA and UBX domain-containing protein At4g15410 OS... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA1DF11FM1 IVIA1 Citrus clementina cDNA clone IC0AAA1DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878822 ID=FC878822; Name=FC878822; organism=Citrus clementina; type=EST; length=233bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTATAATAAATATTAAATT
AAGCAAGTACTACTTGGAAGCTGACTAAGTAACTACAGTTTCTGGATAAC
CACTGAGTTACCAATGCCGCCTTGCTCTCCTTTCTGGTCTATATCGGTGA
GTTGCTTTGGAGGGAACCCCATTGCCGGTAGTTGGTAGTTTCTTGCACTG
CCGGGTCTTGATGCAACTATGAACCTGTGAATA
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