FC878906

Overview
NameFC878906
Unique NameFC878906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10615 contig Ccv1_Contig10615:9..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.928e-74
Identity = 127/223 (56.95%), Postives = 159/223 (71.30%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTC-AAADYVITFC 813
            FT TN+C NT+WPG L+G G PQL  TGF L +G STS++V A WSGR W R+HC+ DS  KF C TGDCGSG + C+G+GA+PPA+L E TL   GG DF+DVSLVDG+NLP+ + P+   G +G+C +  C A +N  CP+EL   +  +G  + CKSAC A   PQYCC+GA+ TPDTC PT +S  FKN CP+AYSYAYDD +STFTC    +Y ITFC
Sbjct:   25 FTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPR---GGSGDCNSTSCAANINTVCPAELS-DKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.352e-69
Identity = 124/222 (55.86%), Postives = 152/222 (68.47%), Query Frame = 1
Query:  157 TITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAA-DYVITFC 813
            T TN C NT+WPG L+G   PQLS TGF L +  S S+  P+ WSGR W RT C+ D+  KFTC T DCGSG + C+G+GA PPATL E T+   GG D++DVSLVDG+NLPM V PQ   G  G C  + C A +N  CP+ L+V +A +G  ++CKSAC AFGD +YCC+    TP+TC PT YS  F+  CP+AYSYAYDD  STFTC+   DYVITFC
Sbjct:   28 TFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQ---GGTGECKPSSCPANVNKVCPAPLQV-KAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.349e-68
Identity = 123/222 (55.41%), Postives = 152/222 (68.47%), Query Frame = 1
Query:  157 TITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAAD-YVITFC 813
            T TN+CS T+WPG L+G   PQLS TGF L  G S S+  P+ WSGR + RT C+ D+  KFTC T DCGSG + C+G+GAAPPATL E T+   GG DF+DVSLVDG+NLPM V PQ   G  G C A+ C A++N  CP+ L+V +  +G  +ACKSAC AF  P+YCC+     P+TC P  YS  FK  CP+AYSYAYDD +STFTC+    Y+ITFC
Sbjct:   28 TFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQ---GGTGKCKASTCPADINKVCPAPLQV-KGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.203e-67
Identity = 127/222 (57.21%), Postives = 148/222 (66.67%), Query Frame = 1
Query:  154 FTITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDSKFT--CLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAADYVITFC 813
            FT+ N C  T+W G L+G G P+L   GF L  G S  ++ PA WSGR WART C  D+     C+TGDCG   L C+G G  PP TLAEFTL G GG DF+DVSLVDGYN+ + + P   SG +G+C  AGC+++LN ACP  LKV +  N   VACKSACE F   QYCC GA   P+TC PT YS  FKNACP AYSYAYDD TSTFTC  A+Y ITFC
Sbjct:   26 FTLRNNCPTTVWAGTLAGQG-PKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCGG--LRCNGGGV-PPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRP---SGGSGDCKYAGCVSDLNAACPDMLKVMDQNNV--VACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.117e-66
Identity = 119/215 (55.35%), Postives = 149/215 (69.30%), Query Frame = 1
Query:  178 NTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAA-DYVITFC 813
            NT+WPG L+G   PQLS T F L +  S S+  P+ WSGR W RT C+ D+  KF+C T DCGSG + C+G+GA PPATL E T+   GG D++DVSLVDG+NLPM V PQ   G  G C  + C A +N ACP++L+V +A +G  ++CKSAC AFGD +YCC+    TP+TC PT YS  F+  CP+AYSYAYDD  STFTC+   DYVITFC
Sbjct:    1 NTVWPGTLTGDQKPQLSLTAFELASKASQSVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQ---GGTGECKPSSCPANVNMACPAQLQV-KAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.117e-66
Identity = 124/221 (56.11%), Postives = 149/221 (67.42%), Query Frame = 1
Query:  157 TITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS-KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAA-DYVITFC 813
            T TN C  TIWPG L+    PQL  TGF L +  S ++ V A W GR WART CT +S KFTC T DC +G + C+G+GA PPA+L E  +    G+DF+DVSLVDGYNLP+ V   T+ GT G+C A  C A +N  CP+EL+V +  +   +ACKSAC AF  PQYCC+GAF T  TC  T YS  FK  CP+AYSYAYDD TSTFTC+ A DYVITFC
Sbjct:   26 TFTNNCPRTIWPGTLTSDQKPQLPNTGFVLASKASLTLGVQAPWKGRFWARTRCTTNSGKFTCETADCSTGQVACNGNGAIPPASLVEINIAANRGMDFYDVSLVDGYNLPVSVA--TRGGT-GDCKATSCRANVNAVCPAELQV-KGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.501e-65
Identity = 120/219 (54.79%), Postives = 142/219 (64.84%), Query Frame = 1
Query:  166 NECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTC-AAADYVITFC 813
            N C   +WPG L+    PQLS TGF L +  S  +  P  W+GR WART C+ D+  KF C T DC SG + C+G+GA PPATLAEF +   GG DF+DVSLVDG+NLPM VTPQ   G  G+C  A C A +N  CPSEL+  +  +G  VAC SAC  FG PQYCC+    TP+TC PT+YS  F NACP AYSYAYDD   TFTC    +Y ITFC
Sbjct:   30 NNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQ---GGTGDCKTASCPANVNAVCPSELQ-KKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 5.502e-63
Identity = 117/218 (53.67%), Postives = 143/218 (65.60%), Query Frame = 1
Query:  166 NECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQD--SKFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAADYVITFC 813
            N+C + +WPGI   AG   L+  GF L A ++ S+ +P  WSGR W R  CT D   +  C TGDCG G+L C+G+G  PPATLAE TL     LDF+DVSLVDGYNL M + P   SG    C+ AGC+++LN  CP  L+V        VACKSAC AF  PQYCC+G F  P +CKPT+YS  FK ACPKAYSYAYDD TS  TC+ A+Y++TFC
Sbjct:   27 NKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCG-GSLSCNGAGGEPPATLAEITLGPE--LDFYDVSLVDGYNLAMSIMPVKGSG---QCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFC 238          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.360e-60
Identity = 114/219 (52.05%), Postives = 135/219 (61.64%), Query Frame = 1
Query:  166 NECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDS--KFTCLTGDCGSGTLECSGSGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAA-DYVITFC 813
            N C  T+WP   +  G PQLS TGF L +  S  +  P  WSGR WART C+ D+  KF C T DC SG L C+G    PPATLAEFT+   GG DF+DVSLVDG+NLPM VTPQ   G  G C    C A +N  CPSEL+     +G  VAC SAC  FG+PQYCC+    T + C PT+YS  F   CP AYSYA+DD    FTC+   +Y+ITFC
Sbjct:   30 NNCPYTVWP---ASFGNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQ---GGTGTCKMGSCAANVNLVCPSELQKI-GSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
BLAST of FC878906 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.963e-54
Identity = 105/221 (47.51%), Postives = 136/221 (61.54%), Query Frame = 1
Query:  160 ITNECSNTIWPGILSGAGTPQLSPTGFSLEAGQSTSISVPASWSGRLWARTHCTQDSKF--TCLTGDCGSGTLECSGSGAAPPATLAEFTLN-GAGGLDFFDVSLVDGYNLPMLVTPQTQSGTAGNCTAAGCIAELNNACPSELKVTEAGNGEDVACKSACEAFGDPQYCCSGAFATPDTCKPTSYSMFFKNACPKAYSYAYDDGTSTFTCAAADYVITFC 813
            + N C  ++WPG+L  AG P     GF L AG+  ++ VPA WSGR+W R  C+ DS+   +C TGDCG G L C+G+  A PAT+ E TL   A  + F+DVSLVDG+N P  V+     G  G C  A C A++N  CPS L+V +   G    C+SAC A G  +YCC+G +A+P  C+PT +S  FK  CP+AYSYAYDD TS   C A  Y+ITFC
Sbjct:   33 MVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCG-GVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAP--VSMAAVGGGVG-CGTAACGADVNVCCPSALEVRDR-EGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248          
The following BLAST results are available for this feature:
BLAST of FC878906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLP1_PYRPY6.928e-7456.95Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1A_MALDO1.352e-6955.86Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP1_PRUPE4.349e-6855.41Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
PR5_ARATH8.203e-6757.21Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TP1B_MALDO3.117e-6655.35Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_CASSA3.117e-6656.11Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV4.501e-6554.79Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLPH_ARATH5.502e-6353.67Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP2_PRUPE4.360e-6052.05Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TLPH_ORYSJ7.963e-5447.51Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878906 ID=FC878906; Name=FC878906; organism=Citrus clementina; type=EST; length=814bp
TCAGATTAATCAAGAGTCAAAACCAAACAAACATTTCATTTACACATTTC
TTTCTCTCTTATTACAAATTCAATGGCGGCCCCTATTCAAATTTCTATCG
CCATAACCACCCTCTGTCTTCTCCAATTGCTTTCCGAAACATTGTCAGCG
ACATTCACAATCACAAACGAGTGCAGCAACACAATATGGCCAGGCATACT
CTCAGGCGCAGGAACCCCACAGCTCTCGCCCACTGGCTTCTCCTTGGAGG
CAGGCCAGTCCACTTCGATCTCTGTTCCAGCTTCTTGGTCAGGCCGCCTT
TGGGCCCGCACTCACTGTACCCAAGATTCCAAATTCACTTGCCTGACCGG
CGACTGTGGCTCCGGCACTCTCGAATGCTCCGGCAGTGGCGCCGCCCCTC
CCGCCACCCTAGCTGAATTCACGTTGAACGGCGCAGGCGGCCTTGATTTC
TTCGACGTCAGCCTCGTGGACGGATATAATCTCCCCATGCTGGTCACACC
TCAAACTCAAAGCGGGACCGCTGGCAATTGTACGGCAGCTGGGTGTATTG
CTGAATTGAACAATGCGTGTCCCTCGGAGCTCAAGGTTACAGAGGCCGGC
AATGGTGAGGATGTTGCTTGCAAGAGCGCATGTGAAGCCTTTGGTGACCC
CCAGTACTGCTGCAGTGGAGCTTTCGCGACGCCGGATACTTGTAAACCCA
CTTCTTATTCAATGTTCTTCAAGAATGCGTGCCCTAAAGCTTACAGCTAC
GCTTATGATGATGGTACCAGCACCTTCACCTGTGCCGCTGCCGATTATGT
CATCACTTTCTGTC
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