FC878907

Overview
NameFC878907
Unique NameFC878907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9089 contig Ccv1_Contig9089:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  119 AGDP----FHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADPGRACSQVILTRSNGAVSNLHFANALGFLKARPLAFC 493
            A DP    + I+GRVYCDTCR GF T+ T YI GA VR+ECK   +  L+ +IDG TD+TGTY I +   H++ IC   L++SP  DC      R  + V+LTR+ G   +L  AN LG+ K  PL  C
Sbjct:   27 ADDPNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVC 155          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.396e-24
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  131 FHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCK--TADPG-RACSQVILTRSNGAVSNLHFANALGFLKARPLAFC 493
            F + G+VYCD CR  F T  +TY++GA V +EC++R    L YS D ETD +GTY I VDGDH+++IC   L  S   DC   + DP  +  +++ LT++NG  + +  AN LGF+K +PL  C
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPEC 150          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.019e-22
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  119 AGDPFHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADP---GRACSQVILTRSNGAVSNLHFANALGFLKARPLAFCPE 499
            A + F ++G VYCDTCR  F T  +T ++GA V++EC++  +    +  +  TD  G Y+I V+GD +D IC  +L+ SP ++C         +  ++V LT +NG  S++  ANALGF++  PL  CPE
Sbjct:   26 AENHFKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPE 155          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 44/123 (35.77%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  131 FHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADPGRACSQVILTRSNGAVSNLHFANALGFLKARPLAFCPE 499
            F + G+VYCDTCR  FET  +  ++GA V+++C++ ++    +S++G TD  G Y + V+GDH++ IC   ++ SP  DCK +  G   +++  + + G  + + FAN L F+KA  +  C E
Sbjct:   27 FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKE 149          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19
Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  122 GDPFHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADPGRACSQVILTRSNG-AVSNLHFANALGFLKARPLAFC 493
            G  F + GRVYCD CR GFET+ +  +QGA V ++C+  N    K   +  TD  G Y I +D DHQ++IC   L  SP   C   +  R  ++V LT +NG     + +AN + F +  PL  C
Sbjct:    3 GPGFVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKEC 127          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  122 GDPFHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADPGRACSQVILTRSNG-AVSNLHFANALGFLKARPLAFC 493
            G  F + GRVYCD CR GFET+ +  ++GA V ++C+  +    K   +  TD  G Y I +D DHQ++IC   L  SP   C   +  R  ++V LT + G     + +AN + F +  PL  C
Sbjct:    3 GPGFVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKEC 127          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 2
Query:  131 FHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADC---KTADPGRACSQVILTRSNGAVSNLHFANALGFLKARPLAFCPE 499
            F+I+G+VYCDTCR  F T  + +I GA VR++CKD  +  + ++  G T + G YN+ ++ DH+++ C   LISS   DC    T    +   + +L   NG    +   N LGFLK   L  CP+
Sbjct:   11 FYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTI---NPLGFLKKEVLPKCPQ 133          
BLAST of FC878907 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  131 FHIRGRVYCDTCRCGFETSATTYIQGAHVRIECKDRNSLNLKYSIDGETDSTGTYNIHVDGDHQDQICYSKLISSPLADCKTADPGRACSQVILTRSNGAVSNLHFANALGFLKARPLAFCPE 499
            FHI+G+VYCDTCR GF T  + +I GA +R++CKD+ + ++ ++  G T + G Y++ V+ DH+++ C   LISS   DC            +  + N         N LGF K   L  C +
Sbjct:   11 FHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQ 133          
The following BLAST results are available for this feature:
BLAST of FC878907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSC13_MAIZE5.193e-2546.51Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE4.396e-2444.35Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
CHE1_CHEAL7.019e-2238.46Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
LAT52_SOLLC1.121e-1935.77Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR1.911e-1938.40Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR1.049e-1736.00Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
LIGV1_LIGVU1.160e-1637.30Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
ALL1_OLEEU1.160e-1634.96Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ7YB23RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YB23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878907 ID=FC878907; Name=FC878907; organism=Citrus clementina; type=EST; length=648bp
TCAATTTTCATTTCCACTACTTTTTTCCCATTTTGCTTTCTTCTTCCCCA
TTGCAGCCATGGCTAGATTGTTTTTATTGTTTGCACTCCTGGCTCTGCTG
CCGGTGGAGCTCGTTAATGCCGGCGACCCGTTCCATATCCGCGGCCGTGT
CTACTGTGACACTTGCCGTTGTGGCTTTGAGACTTCCGCCACCACTTATA
TACAAGGCGCTCATGTGAGAATCGAATGCAAAGATAGGAACAGCTTAAAT
CTGAAATACTCCATCGACGGCGAGACAGACTCAACAGGAACATACAACAT
TCATGTAGATGGTGATCACCAAGATCAAATTTGCTACTCAAAGCTCATCA
GCAGTCCGTTGGCTGACTGCAAAACAGCTGATCCGGGGCGTGCATGTTCG
CAAGTCATCCTCACACGTTCCAATGGCGCCGTTTCAAATCTTCATTTCGC
CAACGCCTTGGGTTTCTTGAAGGCCCGGCCGCTGGCTTTCTGCCCTGAGT
TGCTTAAGAAATTAGTCTCCCTAAAACGACGTCGTGCTTTGAGACTGGTA
ACATCCGAACAAAACCGCGTCGTCGACTGCTGTGACGTGAAAGTTCGCCT
TGGCGAACTCCATCAATTTAACTCTGGTAATTCTATCCTTATCGGATT
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