FC878908

Overview
NameFC878908
Unique NameFC878908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8788 contig Ccv1_Contig8788:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.940e-36
Identity = 72/202 (35.64%), Postives = 124/202 (61.39%), Query Frame = 3
Query:  159 ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            ESK +W ++G  I+ S   + ++FVT  F GHLG ++ A  S+    I+G  YGIMLGM SA++T+ GQA GA ++  +GI  QR+ ++  A A+ L   Y ++ P LK + Q   I+     +++ ++PQ++A+A+  P+Q+FLQ+Q+ V  +  +S+   + H  L W++   L++G++GAA+    S WL+V    +Y+
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYI 252          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.253e-21
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 3
Query:  153 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            W E++++  +A P  L+    F I+ V++ F GHLG+VE  AVS+   +I      +  G+  A +TL  Q  G     ++GI LQR  ++            I     L L  QD E+S+L   Y    +P L A  +   + K+LQ+Q  ++   +    A IF+   N+IL+  L  G++G+A A  +S ++ ++ L +Y+
Sbjct:   46 WQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYI 249          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 59/202 (29.21%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  159 ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            E  ++ ++AGPV ++    F I+FV+  F GHLG+ E A V++   VI      I  G+ SA +TL  Q  G+     +G+ LQR  ++            I   P L  + Q   ++ L+  Y K  +P L A  +     ++LQ+Q  +W   +   A  I +  +N++ +  L  G+ G+A A  IS + + V L VY+
Sbjct:   52 EIVELLKLAGPVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYI 253          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 64/205 (31.22%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  159 ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMP---FYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            E+  +  +AGPV LA    F I+ V++ F GHLG+VE  AV++  +V+      +  G+ SA +TL  Q+ G      +G+ LQR  ++     LC  P    ++     L LL QD +++ LA  Y    +P L A  +     ++LQSQ  +    ++ +AA + +V +N  L+  L+ G+VG+A A   S + +   L +YV
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILI---LLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYV 244          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-19
Identity = 65/223 (29.15%), Postives = 112/223 (50.22%), Query Frame = 3
Query:  120 LGSHKNFRERSW-NESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIF-----ATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAK--LNYGIVGAAIAGDISLWLMVVGLVVYV 764
            L   ++F  ++W  E   + + A PV+L S  ++     T   +GHLG+ E AA S+         + I  G+ SAL+T+  Q+ G+G ++M+G++LQR   +     L L+ F IF         L  L QD      A KY + ++    AYA+   +++FLQ Q     +T I    +  ++FLN++ V    + +G +GA +A  ++LW     L++Y+
Sbjct:   82 LSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAI-----LLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYI 299          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 61/205 (29.76%), Postives = 104/205 (50.73%), Query Frame = 3
Query:  159 ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMP---FYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            E + +  +AGP  LA    F I+F+++ F GHLG++E  AV++   VI      +  G+ SA +TL  Q  G+     +G+ LQR  ++     LC  P    +I     L L  QD ++S L   Y    +P L A  + +   K+L +Q  V    M  +AA + +   N++ +  L+ G++G+A+A  IS + + + L +Y+
Sbjct:   34 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLI---LLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYI 235          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19
Identity = 57/204 (27.94%), Postives = 100/204 (49.02%), Query Frame = 3
Query:  153 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            W+E++ ++ ++GP+ L     F    V   F GHLG+VE A+V++    +      +  G+ SA +TL  Q+ G+     +G+ LQR  ++     L     ++     L L  QD  +S L   Y+   +P L A  + S + K+LQ+Q  VW   +  +     +   N+ LV+ LN G+ G+A A  IS ++    L +++
Sbjct:   57 WDEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHI 260          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19
Identity = 60/205 (29.27%), Postives = 105/205 (51.22%), Query Frame = 3
Query:  159 ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMP---FYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            E + +  +AGP  LA    F I+F+++ F GHLG++E  AV++   VI      +  G+ SA +TL  Q  G+     +G+ LQR  ++     LC  P    +I     L L  QD ++S L   Y    +P L A  + +   K+L +Q  V    +  +AA + +   N++ + +L+ G++G+A+A  IS + + + L +Y+
Sbjct:   33 ELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLI---LLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYI 234          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 57/198 (28.79%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  171 IWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            ++ ++GP+ L     F I  V+  F GHLG+VE A+V++    +      + +G+ SA +TL  Q+ G+     +G+ LQR  +V     L     ++     L L  QD E+S L   Y    +P L    + + + K+LQ+Q   W   +  +     +   N+ LV+ LN G+ G+A A  IS +   V L++Y+
Sbjct:   34 LFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYI 231          
BLAST of FC878908 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 63/212 (29.72%), Postives = 107/212 (50.47%), Query Frame = 3
Query:  138 FRERSWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMP---FYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYV 764
            FRE    E + +  +AGP  L     F I+F+++ F GHLG++E  AV++   VI      +  G+ SA +TL  Q  G+     +G+ LQRS +V     LC  P    ++     L L  QD ++S L   Y    +P L A  +     K+L +Q  V    +  +AA + +   N++ + +L+ G++G+A+A  IS + + + L +Y+
Sbjct:   31 FRE----ELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALV---LLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYI 235          
The following BLAST results are available for this feature:
BLAST of FC878908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TT12_ARATH8.940e-3635.64Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR1.253e-2129.41Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_DANRE4.032e-2029.21Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_MOUSE6.877e-2031.22Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
YJ2D_SCHPO2.613e-1929.15Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_MOUSE3.413e-1929.76Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A2_RABIT5.822e-1927.94Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
S47A1_RAT5.822e-1929.27Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A2_PONAB1.694e-1828.79Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_HUMAN1.694e-1829.72Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ2YA12RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ2YA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878908 ID=FC878908; Name=FC878908; organism=Citrus clementina; type=EST; length=771bp
CTGTGAGCGAGGGTGAGAGGTGTTTGATGGAAGAAACAGAGGAAGAGACA
GCAGCATTAATGGCGGAGAAGAGCCAGACATTTGAGATAGAGACAAAGAC
AAGGGAACAAGATGATGACTTGGGCAGTCACAAAAACTTCAGAGAAAGAA
GCTGGAATGAATCAAAGAAGATATGGGAAATTGCTGGCCCCGTGATTTTA
GCCTCAGGATCTGAATTCTCTATCACCTTCGTTACCGCTGCCTTTGTTGG
TCATTTGGGTGAAGTTGAATTTGCAGCCGTCTCCGTTGTTCAAAATGTCA
TTGAAGGCTTTGTTTATGGAATCATGCTGGGGATGGGCAGTGCTCTGGAG
ACCCTATCTGGTCAGGCTGTCGGTGCTGGACGATTTGATATGCTTGGAAT
TTATTTGCAAAGATCATTCATTGTTACCGGCGCCACAGCTTTGTGCCTAA
TGCCTTTTTATATCTTTGCAACGCCATTTTTAAAGCTTCTAAGCCAAGAC
AAGGAAATTTCAGAGCTTGCAGGGAAGTATTCTAAATGGATAGTTCCGCA
ACTGTTTGCTTATGCTATAAACTCTCCAATACAGAAATTTCTGCAATCGC
AAAGCAGAGTTTGGGTCATGACTATGATTTCGATGGCAGCATTGATATTT
CATGTGTTTTTAAATTGGATTCTGGTGGCAAAGCTCAATTACGGAATTGT
TGGTGCAGCCATTGCTGGGGATATTTCTTTGTGGCTTATGGTCGTGGGAC
TAGTAGTCTATGTAACTTCTG
back to top