FC878910

Overview
NameFC878910
Unique NameFC878910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11360 contig Ccv1_Contig11360:43..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878910 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 5.367e-71
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:  436 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDPGELIK 864
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAKEVMDLIMITQYFDTIKD G   K
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSK 143

HSP 2 Score: 40.817 bits (94), Expect = 5.367e-71
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:  851 GNSSNNTTVFLPHGPGHV 904
            GNSS NTTVF+PHGPGHV
Sbjct:  139 GNSSKNTTVFIPHGPGHV 156
The following BLAST results are available for this feature:
BLAST of FC878910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO5.367e-7189.51Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA41AA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41AA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878910 ID=FC878910; Name=FC878910; organism=Citrus clementina; type=EST; length=904bp
AAAAAACGAGAGTGAGAGAGACATGGGGAATTCGTTTTGCATGTTGTGTG
GGTGCATCGACCAGGCGAGTGTCGGCATCGTCGAGAGGTGGGGCCGGTTC
GAGAAGTTGGCTGAACCGGGTCTACACTTTTTCAACCCTTGCGCGGGGCA
GTGGCTCGCTGGTATCCTCTCCACCAGGATCAATTCCCTCGATGTCCGCA
TCGAGACCAAAACCAAGGACAATGTCTTTGTGCAACTGCTGTGTTCAATT
CAGTACCGGATTGTCAGAGCAAATGCTGATGATGCATTTTATGAGTTGCA
GAACCCCAAAGAGCAGATCCAGGCTTATGTGTTTGATGGTATATTTTTAT
ATTATTTTTCTAGGCTATAATCATTCTGCTTACTTCTTGGTGTAACTTGT
TTTTCTTTTTAGTGGTTCGTGCTCTTGTTCCAAGAATGACATTGGATGAG
CTCTTTGAACAAAAAGGCGAAGTTGCTAAGGCTGTTTTGGAGGAACTTGA
GAAGGTGATGGGTGCATATGGATATAGCATTGAGCACATATTGATGGTAG
ACATTATACCTGATCCTGCTGTGCGCAAGGCAATGAATGAGATCAATGCG
GCTCAAAGGCTTCAGCTTGCTAGTGTATATAAAGGGGAAGCTGAGAAGAT
TCTCCAAGTTAAAAGAGCAGAAGCTGAAGCTGAAGCCAAGTACCTTGGTG
GCGTAGGTGTGGCCAGGCAACGGCAGGCAATAACAGATGGTTTGCGAGAG
AACATTTTGAACTTCTCTCATAAGGTAGAAGGCGCCTCAGCTAAGGAGGT
TATGGATCTCATCATGATCACTCAGTACTTTGACACGATCAAGGACCCTG
GGGAACTCATCAAATAACACAACTGTCTTTCTACCCCACGGTCCTGGTCA
TGTT
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