FC878911
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 3.436e-127 Identity = 235/263 (89.35%), Postives = 241/263 (91.63%), Query Frame = 3 Query: 57 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 MGQG GGLNRQ FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL + Sbjct: 1 MGQGPSGGLNRQGDRKPDGGEKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 260
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 3.436e-127 Identity = 235/263 (89.35%), Postives = 241/263 (91.63%), Query Frame = 3 Query: 57 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 MGQG GGLNRQ FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL + Sbjct: 1 MGQGPSGGLNRQGDRKPDGGDKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 260
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2) HSP 1 Score: 433.335 bits (1113), Expect = 8.197e-121 Identity = 221/265 (83.40%), Postives = 236/265 (89.06%), Query Frame = 3 Query: 57 MGQGTPGGLNRQXXXXXXXXXXXXXXXXX--FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 MGQGTPGG+ +Q FEP A P+RVGRKQRKQKGPEAAARLP V PLSKC+LRLLKLER+KDYLLMEEEFV QERL+P E+K EEDRSKVDDLRG+PMSVG+LEE+IDE+HAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL + Sbjct: 1 MGQGTPGGMGKQGGAPGDRKPGGDGDKKDRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 265
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 366.311 bits (939), Expect = 1.231e-100 Identity = 178/234 (76.07%), Postives = 213/234 (91.03%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RVG+K+R+ KGP+AA +LP VTP ++C+L+LLKLERIKDYL+ME+EF+ NQERLKPQ+EK EE+RSKVDDLRG+PMSVGNLEE+ID+NHAIVS+SVG E+YV ILSFVDKDQLEPGC++L+++KV +VVG+L D+ DPMV+VMK+EKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 24 YEPPIP-TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 256
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.504e-98 Identity = 175/234 (74.79%), Postives = 211/234 (90.17%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.504e-98 Identity = 175/234 (74.79%), Postives = 211/234 (90.17%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.504e-98 Identity = 175/234 (74.79%), Postives = 211/234 (90.17%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 2.172e-97 Identity = 173/234 (73.93%), Postives = 210/234 (89.74%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RVG+K++K KGP+AA++ P VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD LEPGC++L+++KV +V+G+L D+ DP+V+VMK+EKAP E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 9.126e-96 Identity = 165/234 (70.51%), Postives = 209/234 (89.32%), Query Frame = 3 Query: 144 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 +EP P RK++ Q GP+A+A+LPTV P ++C+LRLLK++RI D+LLMEEE+V NQERLKPQ+E+ +E+R++VD++RG+PMSVG LEE+ID++HAIVS++ GPEYYV I+SFVDKD LEPGC++L+H+K +S+VGLL D+ DPM++VMK++KAP ESYADIGGL++QIQEIKEAVELPLTHPELYE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSEL + Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQ 263
BLAST of FC878911 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 4.529e-95 Identity = 163/228 (71.49%), Postives = 208/228 (91.23%), Query Frame = 3 Query: 162 PARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELFR 845 P+R+G+K++ KGP+AA++LP VTP ++C+L+LLK ERIKDYLLME+EF+ NQERLKPQEE+ EE+R+KVD+LRG+PM+VG+LEE+ID+ HAIVS++VG E+YV I+SFVDK+QLEPGC++L+++K +V+G+L D+ DPMVSVMK+EKAP E+YAD+GGLD QIQEIKEAVELPLTHPE YE++GI+PPKGVILYG PGTGKTLLAKAVAN TSATFLR+VGSEL + Sbjct: 33 PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQ 260 The following BLAST results are available for this feature:
BLAST of FC878911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878911 ID=FC878911; Name=FC878911; organism=Citrus clementina; type=EST; length=860bpback to top |