FC878912

Overview
NameFC878912
Unique NameFC878912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length796
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10584 contig Ccv1_Contig10584:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.163e-63
Identity = 97/174 (55.75%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  171 VTAATFTFVNKCDYTVWPGILGS--PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG-----GCRSACEAFGNPEYCCSGS 668
            V A  FT  N C  TVW G L    PKL   GFEL  G SR   AP GWSGRFW RTGCNFD+SG+G C T DCG   + CNG G  PP TLAEFTL G G +DFYDVSLVDGYN+ + +  SG SG C   GCV+DLN +CP+ L+V        C+SACE F   +YCC G+
Sbjct:   21 VMATDFTLRNNCPTTVWAGTLAGQGPKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCGG--LRCNG-GGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGA 191          

HSP 2 Score: 68.9366 bits (167), Expect = 2.163e-63
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1
Query:  673 NSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTAADY 795
            + P TC P+ YS IFKNACP +YSYAYDD TSTFTCT A+Y
Sbjct:  193 DKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANY 233          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.152e-63
Identity = 100/175 (57.14%), Postives = 119/175 (68.00%), Query Frame = 3
Query:  168 GVTAATFTFVNKCDYTVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCS 662
            G  AA  TF NKC YTVWPG L     P+L  TGFEL  G SRS  AP+ WSGRF+GRT C+ D+SG  +CATADCGS QV CNG GAAPPATL E T+ S G QDFYDVSLVDG+N+P+ V   G +G C  + C  D+N+ CP  L+V+G       C+SAC AF  P+YCC+
Sbjct:   21 GAHAAKITFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCT 195          

HSP 2 Score: 59.3066 bits (142), Expect = 8.152e-63
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1
Query:  646 PSTAAVVPLNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCT 783
            P      P + P TC P  YS +FK  CP++YSYAYDD +STFTC+
Sbjct:  190 PKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCS 235          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.808e-62
Identity = 98/178 (55.06%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  168 GVTAATFTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLG-SGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCSGSF 671
            GV +A FTF NKC  TVWPG L   G P+L STGFEL  G S S      WSGRFWGR+ C+ DSSG   C+T DCGS Q+ CNGAGA+PPA+L E TL  +G QDFYDVSLVDG+N+PI +   G SG C  T C  ++N  CP EL  +G      GC+SAC A   P+YCC+G++
Sbjct:   19 GVYSAKFTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAY 196          

HSP 2 Score: 57.7658 bits (138), Expect = 1.808e-62
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  676 SPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTC 780
            +P TC P+ +S +FKN CP++YSYAYDD +STFTC
Sbjct:  198 TPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTC 232          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.645e-60
Identity = 93/175 (53.14%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  168 GVTAATFTFVNKCDYTVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCS 662
            G  AA  TF N C  TVWPG L     P+L  TGFEL    SRS  AP+ WSGRFWGRT C+ D++G  +C TADCGS QV CNGAGA PPATL E T+  +G QD+YDVSLVDG+N+P+ V   G +G C P+ C  ++N+ CP  L+V+        C+SAC AFG+ +YCC+
Sbjct:   21 GAHAAKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCT 195          

HSP 2 Score: 60.8474 bits (146), Expect = 1.645e-60
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query:  667 PLNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTAA-DY 795
            P N+P TC P+ YS IF+  CP++YSYAYDD  STFTC+   DY
Sbjct:  197 PNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDY 240          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.753e-60
Identity = 92/175 (52.57%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  168 GVTAATFTFVNKCDYTVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCS 662
            G  AAT +F N C Y VWPG L S   P+L +TGFEL    S     P  W+GRFW RTGC+ D+SG   CATADC S QV CNG GA PPATLAEF +   G QDFYDVSLVDG+N+P+ V   G +G C    C  ++N  CP+EL+ +G       C SAC  FG P+YCC+
Sbjct:   20 GAHAATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCT 194          

HSP 2 Score: 64.3142 bits (155), Expect = 4.753e-60
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query:  643 TPSTAAVVPLNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTC 780
            TP      P N+P TC P+ YS IF NACP +YSYAYDD   TFTC
Sbjct:  188 TPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTC 233          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.249e-57
Identity = 92/176 (52.27%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  174 TAATFTFVNKCDYTVWPGI---LGSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG-------GCRSACEAFGNPEYCCSGSF 671
            +A+T  F NKC + VWPGI    G   L   GF+L    + S Q P  WSGRFWGR GC FD SG G CAT DCG + + CNGAG  PPATLAE TLG    DFYDVSLVDGYN+ + +     SG C+  GCV+DLN+ CP  L+V+         C+SAC AF +P+YCC+G F
Sbjct:   19 SASTVIFYNKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGS-LSCNGAGGEPPATLAEITLGP-ELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLF 192          

HSP 2 Score: 62.3882 bits (150), Expect = 1.249e-57
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:  676 SPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTAADY 795
            +P +CKP+ YS IFK ACPK+YSYAYDD TS  TC+ A+Y
Sbjct:  194 NPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANY 233          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.029e-53
Identity = 88/172 (51.16%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  168 GVTAATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCS 662
            G  AAT +F N C YTVWP   G+P+L +TGFEL    S     P  WSGRFW RT C+ D+SG   C TADC S Q+ CNG    PPATLAEFT+ + G QDFYDVSLVDG+N+P+ V   G +G C    C  ++N  CP+EL+  G       C SAC  FG P+YCC+
Sbjct:   20 GAHAATMSFKNNCPYTVWPASFGNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCT 191          

HSP 2 Score: 46.595 bits (109), Expect = 1.029e-53
Identity = 19/46 (41.30%), Postives = 24/46 (52.17%), Query Frame = 1
Query:  646 PSTAAVVPLNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCT 783
            P      P  +   C P+ YS IF   CP +YSYA+DD    FTC+
Sbjct:  186 PQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCS 231          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.243e-50
Identity = 81/170 (47.65%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  195 VNKCDYTVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLG--SGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQ------GGCRSACEAFGNPEYCCSGSF 671
            VN C  +VWPG+LG+   P   S GF L  G   + + P GWSGR W R GC+FDS G GSCAT DCG   + CNGA  A PAT+ E TLG  + +  FYDVSLVDG+N P+ +   G    C    C  D+N  CP+ L V+       GCRSAC A G   YCC+G +
Sbjct:   34 VNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCG-GVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDY 202          

HSP 2 Score: 55.0694 bits (131), Expect = 2.243e-50
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:  676 SPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTAADY 795
            SP+ C+P+++S +FK  CP++YSYAYDDATS   C A  Y
Sbjct:  204 SPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRY 243          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.402e-45
Identity = 83/175 (47.43%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  189 TFVNKCDYTVWPGI---LGSPKLDSTGFELQKGGSRSFQAPTG-WSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDF--YDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG--------GCRSACEAFGNPEYCCSGSF 671
            T VN C YT+WP I    G P L+  GF L     RSF AP   WSGR W RTGCN+   G   CAT DCG  ++EC+G G A PATLA+F L  G  DF  Y VSLVDG+NIP+ V      G C   GC  +L  SCP  L+ +         GC+SACEAF + E+CC   +
Sbjct:   32 TLVNNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQH-GKFYCATGDCGG-RIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHY 204          

HSP 2 Score: 49.6766 bits (117), Expect = 4.402e-45
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  673 NSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA 786
            NSP TCKPS YS  FK+ACP +++YA+D  +    C++
Sbjct:  205 NSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSS 242          
BLAST of FC878912 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.878e-44
Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  213 TVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRSGACAPTGCVTDLNRSCPNELRVQG------GCRSACEAFGNPEYCCS 662
            TVWPG L     P+L  T FEL    S+S  AP+ WSGRFWGRT C+ D++G  SC TADCGS QV CNGAGA PPATL E T+  +G QD+YDVSLVDG+N+P+ V   G +G C P+ C  ++N +CP +L+V+        C+SAC AFG+ +YCC+
Sbjct:    2 TVWPGTLTGDQKPQLSLTAFELASKASQSVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCT 161          
The following BLAST results are available for this feature:
BLAST of FC878912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR5_ARATH2.163e-6355.75Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE8.152e-6357.14Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_PYRPY1.808e-6255.06Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1A_MALDO1.645e-6053.14Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP_PRUAV4.753e-6052.57Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLPH_ARATH1.249e-5752.27Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP2_PRUPE1.029e-5351.16Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TLPH_ORYSJ2.243e-5047.65Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
OLP1_SOLLC4.402e-4547.43Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TP1B_MALDO1.878e-4453.13Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878912 ID=FC878912; Name=FC878912; organism=Citrus clementina; type=EST; length=796bp
CAATTCTCATCCTCCTTCCTACACTCTTTTCAAAAGAAGAAAAGAAACTA
AAAGTTCCAAAGAAAGGAGTGACAGTGAGTGTGAGGGATACGGTACATTC
ATTTGCTGCCATGGCTGACTACACTACTCTGTTTACCCTCAACCTTGCTC
TCCTCTTCATTTCAAAAGGTGTAACGGCAGCTACGTTCACATTCGTGAAC
AAATGCGACTACACTGTCTGGCCTGGAATTCTCGGCTCTCCAAAGCTGGA
CAGCACCGGCTTTGAACTTCAAAAGGGCGGTTCCCGTTCTTTCCAAGCAC
CGACCGGCTGGTCCGGTCGCTTTTGGGGCAGAACCGGCTGCAACTTCGAC
AGCTCAGGCCACGGCTCCTGCGCCACTGCCGATTGCGGCTCCAACCAAGT
CGAATGCAACGGAGCCGGCGCAGCCCCGCCTGCCACCTTGGCCGAATTCA
CCCTCGGCTCCGGTTCACAAGACTTCTACGACGTCAGCCTCGTCGACGGT
TATAACATTCCCATAGTTGTTGAAGGGAGTGGAAGATCAGGCGCCTGCGC
CCCCACTGGATGTGTAACTGACTTGAACAGAAGCTGCCCCAATGAACTCA
GAGTCCAAGGCGGCTGTAGGAGTGCCTGTGAGGCTTTCGGTAACCCCGAG
TACTGCTGCAGTGGTTCCTTTAAATTCGCCCGCCACCTGTAAGCCCTCCA
TGTACTCCTCCATTTTCAAGAACGCATGTCCCAAATCTTATAGCTATGCC
TACGATGATGCCACCAGTACTTTCACTTGCACTGCTGCTGATTACA
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