FC878913

Overview
NameFC878913
Unique NameFC878913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.507e-50
Identity = 116/273 (42.49%), Postives = 167/273 (61.17%), Query Frame = 2
Query:   56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH------NATSWLIKVKEDKS--NRKHLLNPLKRHRF----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVFGGDKKYLGQCKGDLLLVDMYLSMDA 838
            M DWS LPKDLL LI+K +++SFD+ +FR VCS+WRS+                                  +R++ +I+ PH      ++  WLIKV+ED +   +  LL+PL   R     +F +VLD+    + E+G E+ L+Y N   + +    +LY+EK ++ +LD   D   FVLLTIHVSGKLA++ S ++ W ++  MPSPYDDV+LF G+F+AVDN GR V VD+S   + LVA+PVFGGDKK+L +  G++LLVDMYLS++A
Sbjct:    1 MVDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAVGFRLS-QRSILLIK-PHEPCIESDSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVE---SLYLEKAVVKYLDCDGDYK-FVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVASPVFGGDKKFLIESCGEMLLVDMYLSLEA 267          
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FB110_ARATH (F-box protein At2g17036 OS=Arabidopsis thaliana GN=At2g17036 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.280e-29
Identity = 85/268 (31.72%), Postives = 141/268 (52.61%), Query Frame = 2
Query:   56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH-----NATSWLIKVKED--KSNRKHLLNPLKRHRFDFA----KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVIL-EQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVF-GGDKKYLGQCKGDLLLVDM 820
            M DW+ LPKDLL LI+K +++SFD+ +FR VCS+WRS+                                   +++ +I+        +   W++KV ++   S +  LL PL   R  F     ++ D+   ++ E+  E  L + +Y     + A  L + K ++ +L+       FVLLTI   GKLA++ S +++W ++ + +PS   D+I+F G+F+A+D  GR V VD+S F + L ANP+  GGDKK+L +  G++ LVD+
Sbjct:    1 MMDWATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHNLPFFPSDDKPFLSNVILRVAH---QSILLIKPNEPQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSSRNYFPQHLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTALELELGKTVVKYLNDDK----FVLLTILEYGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLIESCGEMFLVDI 261          
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FK112_ARATH (Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana GN=At5g24040 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.878e-14
Identity = 71/267 (26.59%), Postives = 121/267 (45.32%), Query Frame = 2
Query:   56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATS--WLIKVKEDKSNRKHLLNPLKRHRFDFAK-------VLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMP-SPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLV--ANPVFGGDKKYLGQCKGDLLLVDM 820
            M  WS+LP ++L LI+ ++D  FD+  FR VCS WRSS                                     V++++ P+      W+ K++  K N + +L+ L   R   A         +D+ N  + E+  E+V  Y  +    L +  +   E++  M L+++ +   +++L       LA+Y S +  W  LE  P S ++ ++ FKGKFYA+D TG+   VD +  +VN    + P     K++L      L+LV+M
Sbjct:    1 MVKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSS-----SLLKFRHMTSLRCPLPLDPGGCGDDCHILSSRVYLLKCPNRDRPQYWMFKLQA-KENGEVVLHSLFLRRNSSAYGCLYPSLSIDLLNCQIFELAQEHVACYSEW--FELFECISKCEERIGFMGLNREKN--EYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIVPFKGKFYAIDRTGKTTVVDPT-LEVNTFQRSRPCDKTRKRWLLMTGDKLILVEM 256          
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FB295_ARATH (Putative F-box protein At5g60060 OS=Arabidopsis thaliana GN=At5g60060 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.474e-13
Identity = 69/275 (25.09%), Postives = 124/275 (45.09%), Query Frame = 2
Query:   47 TLLMADWSQLPKDLLGLIAKRVD----TSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATSWLIKVKEDKSNRKHLLNPLKRHRF-----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKD-WVILEQMPSP-YDDVILFK-GKFYAVDNTGRIVYVDHSCFDVNLVANPVF--GGDKKYLGQCK-GDLLLVDMYL 826
            +LL + WS LP D+L LI+ R+D     +  +   R VC+TWR S+                                 +  V+ + +P N  + L+K++E       +L+     R      +F   +D+Q   +  +   Y + Y N    ++    +L+ +K++++   + S      ++ IH  GKL    S N + W IL+   +  Y+D++L+K  +   VD+ G+ V  D   F V+ +A  +   GG KK+L +C  G++ LVD Y+
Sbjct:    5 SLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLK-QSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGEDS-----AIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVD-FKVSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYV 272          
The following BLAST results are available for this feature:
BLAST of FC878913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKI23_ARATH1.507e-5042.49F-box protein SKIP23 OS=Arabidopsis thaliana GN=SK... [more]
FB110_ARATH7.280e-2931.72F-box protein At2g17036 OS=Arabidopsis thaliana GN... [more]
FK112_ARATH3.878e-1426.59Putative F-box/kelch-repeat protein At5g24040 OS=A... [more]
FB295_ARATH1.474e-1325.09Putative F-box protein At5g60060 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA53BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878913 ID=FC878913; Name=FC878913; organism=Citrus clementina; type=EST; length=854bp
ATTCTCCTTCACTTCCCTGAGAAAAAAAAAAAAAAACACACATTTAACTC
TCCTCATGGCAGACTGGTCGCAGCTCCCGAAAGACCTCCTAGGCCTAATT
GCCAAACGCGTGGACACCTCCTTCGACATCTTCCGCTTCCGCCACGTATG
CTCCACGTGGCGCTCCTCCGTTACACCAACACGCCGCCGTTTCCCTGATC
GATTCCCGCTCCTCCCGAACGAAAACAACAGTAAGAATTTCTTCAGCTCC
TCGTTCGGTTTCTCCCTTTCGAAACGCACAGTTTTCGTCATCCGATCGCC
GCACAACGCGACGAGCTGGCTGATCAAAGTGAAAGAAGACAAATCTAATA
GAAAGCACTTGCTGAATCCACTGAAACGACACCGTTTCGATTTTGCTAAG
GTATTGGACATCCAAAATCTCAGCTTGCTGGAAATTGGACATGAATATGT
GCTGAATTACATAAATTACCCTCCGAATTCATTAAATGATGCTTGTACTT
TATACATGGAGAAGCTAATTTTGATGCATTTAGATCAAAAAAGTGATCTT
GGTGGATTTGTGTTGCTTACTATACACGTGTCTGGTAAATTAGCTATATA
CACGAGTGAAAACAAAGATTGGGTTATATTAGAACAGATGCCCTCACCGT
ATGATGACGTGATATTATTCAAAGGCAAATTTTACGCTGTTGATAATACA
GGGAGGATTGTTTATGTTGATCATTCTTGTTTTGATGTGAATTTGGTTGC
AAATCCTGTGTTTGGTGGCGACAAGAAGTATTTGGGTCAGTGTAAGGGTG
ATTTGTTGTTGGTTGATATGTATTTGAGCATGGATGCCACAGTGCATTCC
AGTT
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