FC878913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.507e-50 Identity = 116/273 (42.49%), Postives = 167/273 (61.17%), Query Frame = 2 Query: 56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH------NATSWLIKVKEDKS--NRKHLLNPLKRHRF----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVFGGDKKYLGQCKGDLLLVDMYLSMDA 838 M DWS LPKDLL LI+K +++SFD+ +FR VCS+WRS+ +R++ +I+ PH ++ WLIKV+ED + + LL+PL R +F +VLD+ + E+G E+ L+Y N + + +LY+EK ++ +LD D FVLLTIHVSGKLA++ S ++ W ++ MPSPYDDV+LF G+F+AVDN GR V VD+S + LVA+PVFGGDKK+L + G++LLVDMYLS++A Sbjct: 1 MVDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAVGFRLS-QRSILLIK-PHEPCIESDSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVE---SLYLEKAVVKYLDCDGDYK-FVLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVASPVFGGDKKFLIESCGEMLLVDMYLSLEA 267
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FB110_ARATH (F-box protein At2g17036 OS=Arabidopsis thaliana GN=At2g17036 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.280e-29 Identity = 85/268 (31.72%), Postives = 141/268 (52.61%), Query Frame = 2 Query: 56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPH-----NATSWLIKVKED--KSNRKHLLNPLKRHRFDFA----KVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVIL-EQMPSPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLVANPVF-GGDKKYLGQCKGDLLLVDM 820 M DW+ LPKDLL LI+K +++SFD+ +FR VCS+WRS+ +++ +I+ + W++KV ++ S + LL PL R F ++ D+ ++ E+ E L + +Y + A L + K ++ +L+ FVLLTI GKLA++ S +++W ++ + +PS D+I+F G+F+A+D GR V VD+S F + L ANP+ GGDKK+L + G++ LVD+ Sbjct: 1 MMDWATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGPKRLLWAHNLPFFPSDDKPFLSNVILRVAH---QSILLIKPNEPQCEADLFGWIVKVWDNIYVSRKMTLLKPLSSSRNYFPQHLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTALELELGKTVVKYLNDDK----FVLLTILEYGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANPLIGGGDKKFLIESCGEMFLVDI 261
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FK112_ARATH (Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana GN=At5g24040 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.878e-14 Identity = 71/267 (26.59%), Postives = 121/267 (45.32%), Query Frame = 2 Query: 56 MADWSQLPKDLLGLIAKRVDTSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATS--WLIKVKEDKSNRKHLLNPLKRHRFDFAK-------VLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKDWVILEQMP-SPYDDVILFKGKFYAVDNTGRIVYVDHSCFDVNLV--ANPVFGGDKKYLGQCKGDLLLVDM 820 M WS+LP ++L LI+ ++D FD+ FR VCS WRSS V++++ P+ W+ K++ K N + +L+ L R A +D+ N + E+ E+V Y + L + + E++ M L+++ + +++L LA+Y S + W LE P S ++ ++ FKGKFYA+D TG+ VD + +VN + P K++L L+LV+M Sbjct: 1 MVKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSS-----SLLKFRHMTSLRCPLPLDPGGCGDDCHILSSRVYLLKCPNRDRPQYWMFKLQA-KENGEVVLHSLFLRRNSSAYGCLYPSLSIDLLNCQIFELAQEHVACYSEW--FELFECISKCEERIGFMGLNREKN--EYMILGKLSFNGLAMYRSVDNRWTELEITPDSFFEGIVPFKGKFYAIDRTGKTTVVDPT-LEVNTFQRSRPCDKTRKRWLLMTGDKLILVEM 256
BLAST of FC878913 vs. ExPASy Swiss-Prot
Match: FB295_ARATH (Putative F-box protein At5g60060 OS=Arabidopsis thaliana GN=At5g60060 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.474e-13 Identity = 69/275 (25.09%), Postives = 124/275 (45.09%), Query Frame = 2 Query: 47 TLLMADWSQLPKDLLGLIAKRVD----TSFDIFRFRHVCSTWRSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTVFVIRSPHNATSWLIKVKEDKSNRKHLLNPLKRHRF-----DFAKVLDIQNLSLLEIGHEYVLNYINYPPNSLNDACTLYMEKLILMHLDQKSDLGGFVLLTIHVSGKLAIYTSENKD-WVILEQMPSP-YDDVILFK-GKFYAVDNTGRIVYVDHSCFDVNLVANPVF--GGDKKYLGQCK-GDLLLVDMYL 826 +LL + WS LP D+L LI+ R+D + + R VC+TWR S+ + V+ + +P N + L+K++E +L+ R +F +D+Q + + Y + Y N ++ +L+ +K++++ + S ++ IH GKL S N + W IL+ + Y+D++L+K + VD+ G+ V D F V+ +A + GG KK+L +C G++ LVD Y+ Sbjct: 5 SLLPSQWSDLPLDILELISDRLDHDSSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLK-QSNVYKLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRICFLPENFPSKIDLQEFHVRLVRRTYRMEYANNGGGAVPCFWSLHSDKVVILSSGEDS-----AIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVD-FKVSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYV 272 The following BLAST results are available for this feature:
BLAST of FC878913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878913 ID=FC878913; Name=FC878913; organism=Citrus clementina; type=EST; length=854bpback to top |