FC878915

Overview
NameFC878915
Unique NameFC878915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11539 contig Ccv1_Contig11539:11..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.740e-34
Identity = 89/244 (36.48%), Postives = 125/244 (51.23%), Query Frame = 3
Query:  186 VTCALAPDMGVTSRDIVIDKFTNIWALFYVPILCQSTK---------------LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSRAQQSWSNIA 869
            VT    P  GV S D++ID+  N+ +  Y P      +               +P++++FHGG F   SA  + Y      L     C+++SVNYR APENP P AY+DG+ +L W+  ++         WL S++ +   IFLAGDS+G NIAHNVALR G S   V         G IL+ P FGG  RT SEK L    +  +++   D YW+  LP G +R+HP  NP S   +S   ++
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS---------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL--------GNILLNPMFGGNERTESEKSL--DGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVS 277          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.046e-30
Identity = 85/236 (36.02%), Postives = 119/236 (50.42%), Query Frame = 3
Query:  204 PDMGVTSRDIVIDKFTNIWALFYVPILCQSTK-------------LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSRAQQSWSNIA 869
            P  GV S D++ID+ TN+ +  Y P    ++              +P++V+FHGG F   SA  + Y      L    G +++SVNYR APEN  P AY+DG+  L W+          S  WL S++ +   IFLAGDS+G NI HNVA+R   S   V         G IL+ P FGG  RT SEK L    +  +++   D YWR  LP G +R+HP  +P     +S   ++
Sbjct:   59 PVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV---------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL--------GNILLNPMFGGTERTESEKRL--DGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLS 275          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.975e-30
Identity = 75/190 (39.47%), Postives = 105/190 (55.26%), Query Frame = 3
Query:  300 LPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWL-SRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSRAQQSWSNI 866
            +P+L++FHGG F   SA  + Y  F   L    G +++SV+YR +PE+  P AY+DG+ +L W+K +          WL S + +   ++LAGDS+G NIAHNVA+R  N   KV         G IL+ P FGG+ RT SEK L    +  +++   D YWR  LP G +RDHP  NP     QS   +
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV---------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVL--------GNILLHPMFGGQERTQSEKTL--DGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGV 276          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  303 PLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEKYLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNP 833
            P++++FHGG F   SA+ + Y        K +  +++SVNYR APE+  P AY+DG+T+L W+  Q     GG           + +FL+GDS+G NIAH+VA+R  +   KV         G IL+   FGG  RT SE+ L    +  ++L   D YW+  LP  ++RDHP  NP
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ--------ARVFLSGDSSGGNIAHHVAVRAADEGVKVC--------GNILLNAMFGGTERTESERRL--DGKYFVTLQDRDWYWKAYLPEDADRDHPACNP 272          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 3
Query:  246 FTNIWALFYVPILCQSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMW-LKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRL 620
            F N+    YVP     T    L Y HGGG+CVGSAA S Y       A +   +++S NYRLAPE   P  +ED + +L W L+Q      G   +          + ++GDSAG N+A  VA +L
Sbjct:   85 FNNVPVRVYVPKRKSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYGVDPE---------RVGVSGDSAGGNLAAAVAQQL 201          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 47/127 (37.01%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  243 KFTNIWALFYVPILCQSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMW-LKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRL 620
            KF NI    YVP          L Y HGGG+CVGSAA S Y       A +   +++S NYRLAP+   P  +ED + +L W L+++  +  G          N   I ++GDSAG N+A  V  +L
Sbjct:   85 KFNNILVRVYVPKRKSEALRRGLFYIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWFLRKKVLAKYG---------VNPERIGISGDSAGGNLAAAVTQQL 202          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  288 QSTKLPLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVA 611
            +ST    +++FHGGGFC+G      +HEF  T+  + G  ++SV+YR+APE P P A +D   +  WL +  + S G S          S I L+GDSAG  +A  VA
Sbjct:  154 KSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEH-SQSLGASP---------SRIVLSGDSAGGCLAALVA 249          
BLAST of FC878915 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  303 PLLVYFHGGGFCVGSAAWSCYHEFLATLAKKAGCIIMSVNYRLAPENPLPAAYEDGFTSLMWLKQQATSSCGGSVDWLSRQCNFSSIFLAGDSAGANIAHNVALRLGNSNNKVATLKPLTFKGTILIQPFFGGEARTNSEK---YLAQPPRSALSLAASDTYWRLALPRGSNRDHPWSNPMSRAQQSWSNI 866
            P  ++FHGGG+ +G+   +  + F   + ++A C++++V+YRLAPE+P PA  +DG+ +L++        C  + D L    N + I + G SAG NIA  ++ ++  S    A   PL  +  +L+ P     A   + K        P+  L  A    Y R  LP   +  +P ++P      S+ N+
Sbjct:  101 PCFLWFHGGGWVLGNI--NTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLY--------CYENADTLG--INPNKIAVGGSSAGGNIAAVLSHKVAAS---PANFPPLVLQ--LLVVPVCDNTANAKTHKSWELFENTPQ--LPAAKMMWYRRHYLPNEKDWSNPEASPFFYPDSSFKNV 272          
The following BLAST results are available for this feature:
BLAST of FC878915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GI1L1_ARATH7.740e-3436.48Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH1.046e-3036.02Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH3.975e-3039.47Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.414e-2737.85Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT5.767e-1337.30Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
AAAD_HUMAN5.767e-1337.01Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
LIP2_MORS12.862e-1238.89Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
YFZ3_SCHPO8.327e-1228.27AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA87BA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878915 ID=FC878915; Name=FC878915; organism=Citrus clementina; type=EST; length=870bp
ATTTTCAAGTCTCATTCTCTTTCAGTGAGAAAAAAAGAAGAATGGCAGCC
ACTATAGATCCAAGTTTAAGCGGCTTAGAGATGCATAAAAATCTCAATCC
ACAGGGAGCTGTTATTGATGAAATTGAAGGGCTCATTAGAGTTTACAAAG
ATGGACATGTGGAGAGACTCCCTATTGTTCCATGTGTCACGTGTGCTTTG
GCTCCGGACATGGGCGTGACATCAAGAGACATAGTCATTGACAAATTCAC
AAACATTTGGGCACTTTTTTATGTCCCAATCCTATGCCAAAGTACTAAAC
TTCCTTTGCTTGTCTACTTCCACGGAGGAGGATTTTGCGTCGGCTCGGCT
GCTTGGAGTTGCTACCACGAGTTCCTAGCAACGCTAGCGAAGAAAGCCGG
TTGCATAATCATGTCTGTCAATTACCGTTTAGCCCCTGAAAATCCTCTGC
CAGCTGCTTATGAAGATGGGTTTACTTCCCTAATGTGGCTTAAACAACAG
GCAACGTCATCATGTGGGGGTAGTGTTGACTGGTTGTCAAGGCAATGCAA
TTTCAGTAGCATATTCTTAGCTGGTGATAGTGCTGGTGCCAATATAGCCC
ACAATGTAGCCTTAAGGCTTGGTAATTCTAACAATAAAGTTGCAACCTTG
AAGCCATTAACTTTCAAGGGTACGATTTTAATTCAACCATTTTTCGGAGG
AGAAGCACGTACAAATTCTGAGAAGTATTTGGCACAGCCACCACGGTCGG
CGCTGAGCTTGGCCGCCTCGGATACTTACTGGCGATTAGCCTTGCCTCGT
GGATCAAACCGTGATCATCCTTGGAGCAATCCGATGTCAAGGGCTCAACA
GAGTTGGAGCAATATTGCGG
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