FC878919

Overview
NameFC878919
Unique NameFC878919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13882 contig Ccv1_Contig13882:55..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.730e-41
Identity = 97/231 (41.99%), Postives = 142/231 (61.47%), Query Frame = 3
Query:  174 KGLQVNSGVESNEGTKLKVE----VSQHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNN-CVRESGLISSVGPVIGNNITEQSLRML-NDSVPSTSSKDSVRDSNLVPERKR 848
            +G++ NS VE N    L+V     V +   S  + V   E   Q +  PS+  +S S     +VT  +S  P+   T Q+L LV V T    +    +S  +  +SV  + +TP  DGYNWRKYGQKQVKSPKGSRSYY+CTY++CCAKKIECS+ SG+V+EIVNKG+H+H+PPRK +   RE  + +++ PV  ++   + L ++ + S PS S+K+ + +S  + +RKR
Sbjct:   60 QGVRENSSVEPNVEDVLEVNETDSVKETVVSAIVPVDEVEENRQVETSPSLAASSDS----LTVTPCLSLDPATASTAQDLPLVSVPTK---QEQRSDSPVVNRLSVTPVPRTPARDGYNWRKYGQKQVKSPKGSRSYYRCTYTECCAKKIECSNDSGNVVEIVNKGLHTHEPPRKTSFSPREIRVTTAIRPVSEDDTVVEELSIVPSGSDPSASTKEYICESQTLVDRKR 283          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 53/172 (30.81%), Postives = 75/172 (43.60%), Query Frame = 3
Query:  234 VSQHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISSVGPVIGNN 749
            ++  +    +  QA ++    Q Q    P S  +   +   +  +SAP P          + +T+ V     ++   L        V  P  DGYNWRKYGQKQVK  +  RSYYKCT   C  KK       G V EI+ KG H+H+PP+      +    +  G  I NN
Sbjct:  154 MTHQQALAQVTAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPA---------QRETSDVTIIEHRSQQPLN-------VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNN 309          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 57/205 (27.80%), Postives = 86/205 (41.95%), Query Frame = 3
Query:  234 VSQHEGSGSIAVQAAESQTQY--QLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRK---NNCVRESGLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLV 833
            ++  +    +  QA +    +  Q Q S  P+S  +         ++  PS +   ++     V   S  +      S  ++ S       P  DGYNWRKYGQKQVK     RSYYKCT+  C  KK       G V EI+ KG H+H+ P+K   NN   +S  I++      +++ +         V +T       DS  V
Sbjct:  157 MTHQQALAQVTAQAVQGNNVHMQQSQQSEYPSSTQQQQQQQQQASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGSCKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEV 361          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  486 HIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISSV 728
            ++V    +DGY WRKYGQKQVK  +  RSY+KCTY DC +KKI  +   G + EI+ KG H+H  P       +S L SSV
Sbjct:  159 YMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQSSLPSSV 239          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  501 PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISS 725
            P  DGYNWRKYGQK VK  +  RSYYKCT+ +C AKK       GH+IEI+  G H H  P  N   R SG+ SS
Sbjct:  176 PADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKPPPN---RRSGIGSS 247          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.246e-14
Identity = 67/231 (29.00%), Postives = 95/231 (41.13%), Query Frame = 3
Query:  117 ASQLTEPHQLQLTENNKHHKGLQVNSGVESNEGTKLKVEVSQHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVP--EANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISSVGPVIGNNITEQSLRMLNDSVPSTSS 803
            A+ L  P    L  N  + KG  +N G +SN       + S H  S  ++                 PT+ +  + T+ T   S   S     +N S     T + P  +A   N  E +             DGYNWRKYGQKQVK  +  RSYYKCT+ +C  KK       G + EIV KG H+H  P+     R S   S+    + N   + + +  +D   S +S
Sbjct:   80 ANVLASPTTGALITNVTNQKG--INEGDKSNNNNFNLFDFSFHTQSSGVSA----------------PTTTTTTTTTTTTTNSSIFQSQEQQKKNQSEQWSQTETRPNNQAVSYNGREQRKGE----------DGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTR--RSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNS 280          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.246e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  510 DGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCA-KKIECSDHSGHVIEIVNKGMHSHDPPR 686
            DGYNWRKYGQKQVK  +  RSY+KCTY +C   KK+E S   G +IEIV KG H+H  P+
Sbjct:  118 DGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKPQ 177          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.851e-14
Identity = 55/165 (33.33%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  330 SELSPTSVTEPISSA-----PSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESGLISSVGPVIGNNITEQSLRMLNDSVPSTSSKD 809
            S  SP+S+++   S+     P+P       S   +   S  E ++Q S      S   I+     DGYNWRKYGQK VK  +  RSYYKCT+ +C  KK+    H G + +I+ KG H H  P+     R SG         G    E+ L    D  PS++ +D
Sbjct:  151 SSHSPSSISDAAGSSSELSRPTPPCQMTPTSS-DIPAGSDQEESIQTSQNDSRGSTPSIL---ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGR--RNSG---------GMAAQEERL----DKYPSSTGRD 296          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.851e-14
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  360 PISSAPSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVV-HIVKTP------VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRK 689
            P SSA     +GQ     ++ T S P+++L   S    ++++ H+ + P      V+DGYNW+KYGQK+VK  K   SYYKCTY  C +K+       G V EIV K  H+H+PP +
Sbjct:  417 PSSSAVQSFSSGQP----QIPT-SAPDSSLLAKSNTSGITIIEHMSQQPLNVDKQVNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPNQ 528          
BLAST of FC878919 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.948e-14
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  396 QNLSLVKVDTASVPEANLQ-NSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPP--RKNNCVRESGLISSVGPVI 740
            Q+L + +VD  +    N   N++  ++ +VV++ K P  DGYNWRKYGQK +K  +  RSYYKCT+ +C  KK       G + +I+ KG H H+ P  R+    R+S  +   G ++
Sbjct:  130 QSLDVSQVDQRARNHYNNPGNNNNNRSYNVVNVDK-PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHERPQNRRGGGGRDSTEVGGAGQMM 246          
The following BLAST results are available for this feature:
BLAST of FC878919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WRK32_ARATH1.730e-4141.99Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRKY4_ARATH9.560e-1630.81Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH2.130e-1527.80Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK25_ARATH3.633e-1548.15Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK34_ARATH2.355e-1453.33Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK33_ARATH5.246e-1429.00Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK26_ARATH5.246e-1460.00Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK20_ARATH6.851e-1433.33Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK19_ARATH6.851e-1439.32Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK58_ARATH8.948e-1436.44Probable WRKY transcription factor 58 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878919 ID=FC878919; Name=FC878919; organism=Citrus clementina; type=EST; length=873bp
AAAGCGAGAGCTTCGAAGCTCGTAAACGACATGAAAACCCTCAAAACGAC
GAGTTTGAAGAAGAAGAGGAAGAGGAGGATGAGGAAATATTAGACGACGA
AGAAGAAGATGAGGGAGCGAGTCAACTCACTGAGCCACACCAACTGCAAC
TCACCGAGAATAATAAACACCATAAAGGTTTACAAGTGAATTCTGGAGTG
GAATCCAATGAAGGAACTAAACTGAAGGTTGAGGTGTCTCAACATGAAGG
TTCGGGAAGTATAGCGGTCCAGGCTGCTGAATCTCAGACACAATATCAAC
TTCAGCCATCCATATGCCCAACATCCTTATCTGAGCTATCACCTACTTCT
GTTACAGAACCTATATCATCTGCTCCAAGTCCAACTTTAACAGGACAAAA
CCTGTCACTTGTAAAGGTTGATACTGCATCTGTGCCAGAAGCAAACTTGC
AAAACTCTTCTGAGCTGAAAAATGTATCTGTTGTTCATATTGTGAAGACA
CCTGTTTCTGATGGTTACAATTGGCGGAAATATGGCCAAAAACAAGTTAA
GAGTCCTAAAGGTTCTCGAAGCTACTACAAGTGCACATATTCTGATTGTT
GTGCTAAAAAGATTGAATGTTCTGATCACTCAGGTCATGTTATAGAGATT
GTTAATAAAGGCATGCACAGTCATGATCCACCTAGAAAGAATAACTGTGT
GAGGGAAAGTGGGCTCATATCATCTGTTGGACCTGTTATAGGGAATAACA
TTACAGAACAGTCCCTCAGGATGCTTAACGATTCAGTTCCATCAACATCT
TCAAAAGATTCTGTACGAGACTCAAATTTAGTTCCTGAAAGAAAACGGCC
AAACTTAAGTAGCTTTGCTGGGG
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