FC878924

Overview
NameFC878924
Unique NameFC878924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11267 contig Ccv1_Contig11267:160..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.618e-72
Identity = 138/225 (61.33%), Postives = 169/225 (75.11%), Query Frame = 3
Query:  225 GGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWMSLFYYPFRIHERC 899
            GG AW  GR++RG VAIPGPKG P+ GSL  +S GL HR L ++A   G  QLM+FSLG  TPAV+ SDP  A+E+LTSPHFA+RP+KQSA+ L+F RAIGFAPNG YWRLLRRIAS+HLF+PRRI AHE GR  D   ML +I  E    G V +R+HLQ AALNNIMGSVFG R+D+  +++ +++L EMV  GF+LLGAFNW+D+LPW+     P RIH RC
Sbjct:   64 GGCAWA-GRHKRGRVAIPGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLG-CTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLLGAFNWADHLPWLRPL-DPLRIHARC 285          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C78AB_ORYSJ (Cytochrome P450 78A11 OS=Oryza sativa subsp. japonica GN=CYP78A11 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 8.420e-71
Identity = 141/238 (59.24%), Postives = 169/238 (71.01%), Query Frame = 3
Query:  207 WAFSTGGGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAM---AWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDS----KSLQELTEMVRGGFELLGAFNWSDYLPWMSLFYYPFRIHERC 899
            WA S GG  AW +GR + G+  I GP+G+P+FGS+F LSRGL HR L AM   A +    +LMAFS+G  TPAVV+S P TA+E+L  P FADRP+K+SA  L+F+RAIGFAP+G YWRLLRRIAS+HLFSPRR+ AHEPGR  D   ML  +A EQ   G V LR HLQ AALNNIMGSVFG RYD+   S       ++L  MVR GFELLGAFNWSD+LPW++  Y P  +  RC
Sbjct:   53 WAASPGGP-AWAHGRGRLGATPIEGPRGLPVFGSIFALSRGLPHRALDAMSRDAAAPRARELMAFSVG-ETPAVVSSCPATAREVLAHPSFADRPLKRSARELLFARAIGFAPSGEYWRLLRRIASTHLFSPRRVAAHEPGRQADATAMLSAMAAEQSATGAVVLRPHLQAAALNNIMGSVFGRRYDVSSSSGAAADEAEQLKSMVREGFELLGAFNWSDHLPWLAHLYDPNHVARRC 288          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.657e-59
Identity = 126/234 (53.85%), Postives = 150/234 (64.10%), Query Frame = 3
Query:  207 WAFSTGGGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNT-QLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDI--DRDSKSLQELTEMVRGGFELLGAFNWSDYLPWMSLFYYPFRIHERC 899
            WA S GG  AW NGR    S+    P   P   +        A R        R    +LMAFS+G  TPAVV+S P TA+E+L  P FADRP+K+SA  LMF+RAIGFAPNG YWR LRR+AS+HLFSPRR+ +HEPGR  D   ML +IA EQ  +G V+LR HLQ AALNNIMGSVFG RYD+     +   + L  MVR GFELLGAFNWSD+LPW++  Y P  +  RC
Sbjct:   52 WATSPGGP-AWTNGRGASASLLSWDPVVCPCSAASSRCPGAAAPRPRRDGPRRRPRAKELMAFSVG-DTPAVVSSCPATAREVLAHPSFADRPVKRSARELMFARAIGFAPNGEYWRRLRRVASTHLFSPRRVASHEPGRQGDAEAMLRSIAAEQSASGAVALRPHLQAAALNNIMGSVFGTRYDVTSGAGAAEAEHLKSMVREGFELLGAFNWSDHLPWLAHLYDPSNVTRRC 283          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C78A3_SOYBN (Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.701e-43
Identity = 109/260 (41.92%), Postives = 150/260 (57.69%), Query Frame = 3
Query:   93 EKSLWVFTLFGSLAQQNXXXXXXXXXXXXXXXXXXXXTWAFSTGGGVAWQNGRNQRGSVAI-PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWMSLF 869
            + +LW+  L     Q+N                     + +S  GG AW         ++I PGPKG PL GS+  L   LAH  +AA A +    +LMAFSLG  T  +V   P  AKEIL S  FADRP+K+SA  LMF+RAIGFA  G YWR LRRIAS+HLF PR+I A E  R    A M+H I N ++H   + +R+ L+ A+L+N+M SVFG  Y +   +  +++L  +V  G++LLG FNW+D+LP+++ F
Sbjct:    6 DDNLWIIALTSKCTQENLAWVLLIMGSLWLTMTF----YYWSHPGGPAWGKYYTYSPPLSIIPGPKGFPLIGSM-GLMTSLAHHRIAAAAATCRAKRLMAFSLG-DTRVIVTCHPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFASYGVYWRSLRRIASNHLFCPRQIKASELQRSQIAAQMVH-ILNNKRHRS-LRVRQVLKKASLSNMMCSVFGQEYKLHDPNSGMEDLGILVDQGYDLLGLFNWADHLPFLAHF 257          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71A4_SOLME (Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 60/198 (30.30%), Postives = 95/198 (47.98%), Query Frame = 3
Query:  276 PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEIL-TSPH-FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWM 860
            P P+ +P+ G+L  L     HR+L  ++   G   L+     GS P +VAS    A++IL T  H +A RP    A+ L++ S+ +GF+P G YW  +R I   HL S +R+ ++   R  + A M+  I  +      ++L +HL     N       G  YD        +++ E      +LL  FN  DY+PW+
Sbjct:   38 PSPRKLPIIGNLHQLGSH-PHRSLRKLSQKYGPVMLLHL---GSKPVIVASSVDAARDILKTHDHVWATRPKYSIADSLLYGSKDVGFSPFGEYWWQVRSIVVLHLLSNKRVQSYRDVREEETANMIEKI-RQGCDASVINLGEHLCFLTNNITSRVALGRTYDERESGIDAKDILEQF---LQLLDTFNVGDYIPWL 227          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71A2_SOLME (Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 64/212 (30.19%), Postives = 109/212 (51.42%), Query Frame = 3
Query:  255 QRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSV-FGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLP---WMSLF 869
            ++  + +P P+ +P+ G+L  L   L HR+L  ++   G   L+ F   GS P +VAS    A++I+ +    +A RP     + L + S+ +GF+P G YWR  + I   HL S  R+ ++   R  + A M+  I  +   +  ++L +HL  +  NNI+  V  G  YD +++S     +  ++    ELLG FN  DY+P   W++ F
Sbjct:   32 KQNMLLLPSPRKLPIIGNLHQLG-SLPHRSLHKLSQKYGPVMLLHF---GSKPVIVASSVDAARDIMKTHDVVWASRPKSSIVDRLSYGSKDVGFSPFGEYWRRAKSITVLHLLSNTRVQSYRNVRAEETANMIGKI-RQGCDSSVINLGEHL-CSLTNNIISRVALGRTYD-EKES----GIEHIIEQFVELLGIFNVGDYIPRLEWVNKF 232          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71BA_ARATH (Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.547e-14
Identity = 55/201 (27.36%), Postives = 96/201 (47.76%), Query Frame = 3
Query:  276 PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSP--HFADRPIKQSAECLMFSRA-IGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYD---IDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWM 860
            P P G+P+ G+L  L   L H++L  ++   G   L+     G  P V+ S P TAK++L     H   RP  +    L ++   I F+    YW+ LR++    LF  +RI + +P +  +   ++ +IA        V+L        +N I  +VFGV +    ++ D     +  ++V    E+LG+F+ SD+ P++
Sbjct:   32 PSPPGLPIIGNLHQLGE-LPHQSLCKLSKKYGPVMLLKL---GRVPTVIVSTPETAKQVLKDYDLHCCSRPSLEGTRKLSYNYLDIAFSRFDDYWKELRKLCVEELFCNKRINSIQPIKEAEMEKLIDSIAESASQKTLVNLSDTFLSLNVNVICKAVFGVNFQGTVLNND-----KFQDLVHEALEMLGSFSASDFFPYV 223          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71AQ_ARATH (Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=CYP71A26 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.245e-14
Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 3
Query:  273 IPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMFSRA-IGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQ--LAALNN--IMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWMS 863
            +P P G+PL G+L  L R   HR+L +++   G   L+ F   G  P +V S    A+++L +    FA RP  +  E L++ +  +  AP G YWR ++ +   HLFS + + +    R  + ++M+  I         +SL  +L   L +L N  I     G +Y  + D K L E         +LLG F+   Y+PW++
Sbjct:   32 LPSPPGLPLIGNLHQLGRH-PHRSLCSLSHRYGPLMLLHF---GRVPVLVVSSAELARDVLKTHDRVFASRPRSKIFEKLLYDKHDVASAPYGEYWRQMKSVCVLHLFSNKMVRSFREVREEEISLMMEKIRKS------ISLPVNLSKILVSLTNDVICKVALGRKYGGETDFKELMERLN------KLLGTFSVGSYVPWLA 219          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.236e-13
Identity = 58/202 (28.71%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  267 VAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLPWMS 863
            +  P P  +PL G+L  LS+   HR+L  ++   G   L+ F   GS P +VAS    A+++L +    FA RP  +  E L++ SR +  AP G YWR ++ ++  HL S + + + +  R  +  +M+  I         V+L K L     + I     G +Y +  D K      E++      LG F    Y+PW++
Sbjct:   28 INFPSPPRLPLIGNLHQLSQH-PHRSLCYLSHRYGPLMLLHF---GSVPVIVASTAEAARDVLKTHDRVFASRPRSKIFEKLLYKSRNMASAPYGEYWRQMKSVSVLHLLSNKMVRSFQDVRQEEITLMMETIRKSSSKP--VNLSKILSSLTNDVICRVALGRKYGVGTDFK------ELIDRLMRQLGTFTIGSYVPWLA 217          
BLAST of FC878924 vs. ExPASy Swiss-Prot
Match: C71A3_SOLME (Cytochrome P450 71A3 (Fragment) OS=Solanum melongena GN=CYP71A3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.614e-13
Identity = 59/198 (29.80%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  276 PGPKGVPLFGSLFTLSRGL-AHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIAN-EQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVRGGFELLGAFNWSDYLP 854
            P P+ +P+ G+L  L  GL  HR+L  ++   G   L+     GS P +VAS     ++I+ +    +++RP  + A+ L++ S+ + F+P+G YWR +R I   HL S +R+ ++   R  + + M+  +       +    LR      A N I     G +Y+ + D+K+   L + V    ELLG FN  DY+P
Sbjct:   27 PSPRKLPIIGNLHQL--GLHPHRSLHKLSKKYGPVMLLHL---GSKPVIVASSVEAVRDIMKTNDLVWSNRPKSKMADRLIYGSKDVSFSPHGEYWRQIRSITVLHLLSNKRVQSYRAAREEETSNMIEKLKQMSNSSSSATDLRDLFCWLAYNIINRVALGKKYNDEIDAKA--TLDKFV----ELLGTFNVGDYIP 213          
The following BLAST results are available for this feature:
BLAST of FC878924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
C78A4_PINRA2.618e-7261.33Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C78AB_ORYSJ8.420e-7159.24Cytochrome P450 78A11 OS=Oryza sativa subsp. japon... [more]
C78A1_MAIZE9.657e-5953.85Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C78A3_SOYBN9.701e-4341.92Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=... [more]
C71A4_SOLME1.907e-1430.30Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71... [more]
C71A2_SOLME1.907e-1430.19Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71... [more]
C71BA_ARATH5.547e-1427.36Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=C... [more]
C71AQ_ARATH7.245e-1429.41Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=C... [more]
C71AN_ARATH1.236e-1328.71Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]
C71A3_SOLME1.614e-1329.80Cytochrome P450 71A3 (Fragment) OS=Solanum melonge... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878924 ID=FC878924; Name=FC878924; organism=Citrus clementina; type=EST; length=902bp
AGAAAAGAAAAAAAACAAAAAGAAACTCAACTACTCATTCCTCTGCAAGT
TAAACAATATTTAATAACATGGAGTTAGGGTTTATCGATAGAGAAAAATC
TTTGTGGGTTTTCACTCTCTTTGGTTCTCTTGCTCAACAAAATCTTTTTG
ATTCGTATAGTTTGTTGTCACTCTTTTTAGCTTTGGTTTTGCTTTATCTA
CTCACTTGGGCTTTCTCCACCGGCGGCGGAGTCGCGTGGCAGAACGGGAG
AAACCAGAGAGGCTCCGTCGCGATCCCGGGACCAAAGGGTGTTCCGTTAT
TTGGCAGCTTGTTCACTCTGAGCCGCGGCTTGGCTCATCGGACGTTAGCA
GCCATGGCTTGGAGCCGAGGGAACACTCAGCTGATGGCCTTCAGCCTCGG
CGGCTCGACTCCCGCTGTGGTCGCCTCCGACCCTTACACTGCCAAAGAAA
TCTTGACGTCGCCCCACTTCGCTGACCGTCCGATCAAGCAGTCAGCTGAG
TGCCTGATGTTCAGCCGGGCAATAGGCTTCGCTCCCAACGGGACTTACTG
GCGACTCTTGCGCAGAATTGCTTCGTCTCACCTTTTCTCTCCCCGGCGCA
TTTTAGCCCACGAACCCGGCCGCCACCTAGACTGCGCTGTCATGCTACAC
AACATTGCAAACGAACAGAAACATAACGGTTTTGTCTCTTTAAGGAAACA
CCTCCAGTTGGCTGCCTTGAACAACATCATGGGAAGTGTGTTCGGCGTCA
GATACGATATTGACCGCGATAGCAAATCGCTTCAAGAGCTCACCGAAATG
GTAAGGGGAGGTTTTGAGTTATTGGGGGCATTTAATTGGTCAGATTATTT
GCCATGGATGAGTTTGTTTTACTATCCGTTTCGTATCCACGAACGTTGCT
TG
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