FC878925

Overview
NameFC878925
Unique NameFC878925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10585 contig Ccv1_Contig10585:1..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878925 vs. ExPASy Swiss-Prot
Match: ATXR4_ARATH (Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana GN=ATXR4 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 5.323e-76
Identity = 145/265 (54.72%), Postives = 184/265 (69.43%), Query Frame = 2 
Query:  140 KMCLGRYSRCLISRLQSLHLQKRQLCSTATHNGKPSQPSPPSIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQYFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAESADSIYILQPASLSPEMILEMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYTNVLARIRINAFRIELAGG-LYEDLLXXXXXXXXXXXXVGKCIYMLPSFYNHDCDPN 931
            ++ L RYSRC  SRL++L        S A++     Q  PP I+V LTESAGR VFATR+I A DLIHTAKP++  P+L  L+SVCY CL+K+  S++ F+     +C + C++N+K F DVE RADWS+F+DYCR+   KYPL+VKRL CMIISGA  AD + ILQPA LS EMI ++E+G+ +L +AF+KA   D+ + FL KQWYT +LARIRINAFRI+L GG   EDLL            VG  +YMLPSFYNHDCDPN
Sbjct:    3 RLALNRYSRCF-SRLKTLTTPLFFSSSAASNRDGDYQIGPPPIRVGLTESAGRAVFATRKIGAGDLIHTAKPVVACPSLLKLDSVCYLCLKKLMGSAK-FEDRGVSYCSQECQENSKGFLDVETRADWSSFDDYCRTHNFKYPLMVKRLCCMIISGARPADCLDILQPAVLSSEMISKIEDGYGLLWNAFRKANFKDDDVAFLTKQWYTAILARIRINAFRIDLVGGSCGEDLLSLAAASVEGEGAVGHAVYMLPSFYNHDCDPN 265
The following BLAST results are available for this feature:
BLAST of FC878925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATXR4_ARATH5.323e-7654.72Histone-lysine N-methyltransferase ATXR4 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA99CH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878925 ID=FC878925; Name=FC878925; organism=Citrus clementina; type=EST; length=931bp
CTTTTTTCCTCAAGAGGAGCATGAATCCATGAATGAGTCTGTACAACTGC
TAACCCCCAGACTCGCTCAGTATGATTTTATTGGTCATAATTTTGTGATC
TTATTTATTCCATTTCTCCCACAAGTCTGTTACTTTTGGAAGATGTGCTT
AGGCCGGTATAGCCGTTGCCTGATTTCCCGCCTCCAAAGTCTTCATTTAC
AAAAGAGGCAGCTTTGCTCCACCGCAACGCACAATGGGAAACCCAGTCAA
CCCTCGCCGCCGTCAATCCAAGTCGCGCTCACCGAGTCCGCCGGTCGTGG
CGTCTTCGCCACTCGGAGAATCAGGGCCAGCGATCTCATCCACACCGCCA
AGCCCATCATAACTCACCCGACTCTTTCCACACTAAACAGCGTGTGTTAC
TTTTGTCTCAGAAAGATTACTTCGAGTTCGCAGTATTTTCAACATCATAA
TGCTCGCTTTTGCGGTGAAGTGTGCAAAGATAACGCTAAGGCATTTTATG
ATGTTGAGAGGAGAGCAGATTGGTCTGCTTTCAATGACTATTGCCGGAGT
CAAGGATTGAAATACCCTCTTCTGGTGAAGCGGTTGGCTTGTATGATTAT
ATCAGGAGCTGAATCTGCTGACAGTATTTACATACTTCAACCTGCGAGTT
TATCCCCTGAAATGATTTTGGAGATGGAAGAGGGTTTTGTTATGCTAAGG
AGTGCCTTTAAAAAGGCAGGTATAGATGATGAACAGATGAAATTTCTAAA
CAAGCAATGGTACACTAATGTACTGGCTCGAATTCGTATCAATGCGTTTC
GTATTGAATTGGCTGGAGGATTGTATGAAGATCTTCTTTCATCAGCTGCA
GCCTCCATAGAATCTGAAATTGCGGTTGGGAAATGCATTTATATGCTTCC
ATCCTTCTATAACCACGATTGTGATCCAAAT
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