FC878926

Overview
NameFC878926
Unique NameFC878926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.408e-81
Identity = 137/177 (77.40%), Postives = 155/177 (87.57%), Query Frame = 1
Query:   31 ISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 561
            ISS+ +AT NR +  QAS+  PFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.149e-81
Identity = 143/180 (79.44%), Postives = 160/180 (88.89%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 555
            MASSMISSATVAT +RA+ AQA+MV PFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE++RSPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.662e-80
Identity = 143/182 (78.57%), Postives = 159/182 (87.36%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 561
            MA SMISSATVA  +RAS AQ+SMV PFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R   IPCLEFELE G+VYREH+RSPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.557e-79
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 1
Query:   16 MASSMISSATVAT--ANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASSMISS TVAT  A+R + AQA MV PF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YL+R  W+PCLEFELE G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.908e-78
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 1
Query:   16 MASSMISSATVAT--ANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASSMISS TVAT  A+R + AQA MV PFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YL+R  W+PCLEFELE G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.254e-78
Identity = 134/176 (76.14%), Postives = 154/176 (87.50%), Query Frame = 1
Query:   25 SMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 552
            ++ISSA V T NRAS AQA++V PFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+HRSPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.237e-77
Identity = 135/181 (74.59%), Postives = 153/181 (84.53%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASSM+S+ATVA+ NR S AQA+MV PFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH R PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.598e-77
Identity = 136/181 (75.14%), Postives = 153/181 (84.53%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASSM+S+A VA  NRAS AQASMV PFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+HRSPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.367e-76
Identity = 134/182 (73.63%), Postives = 160/182 (87.91%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASS++SSA VAT  R+++AQASMV PFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of FC878926 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.195e-76
Identity = 134/181 (74.03%), Postives = 156/181 (86.19%), Query Frame = 1
Query:   16 MASSMISSATVATANRASLAQASMVPPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 558
            MASS++SSA VAT  R+++AQA+MV PFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of FC878926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
RBS_LACSA2.408e-8177.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR9.149e-8179.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE2.662e-8078.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY6.557e-7977.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.908e-7877.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA3.254e-7876.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.237e-7774.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR3.598e-7775.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU1.367e-7673.63Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS8_NICPL5.195e-7674.03Ribulose bisphosphate carboxylase small chain 8B, ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878926 ID=FC878926; Name=FC878926; organism=Citrus clementina; type=EST; length=776bp
AAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGC
CACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCCCCCCCTTCA
CCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTATCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGC
CACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATA
TTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGG
GGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCA
AACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATATATT
TTAATAATTGAATCCTTTGTTTTCAG
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