FC878931

Overview
NameFC878931
Unique NameFC878931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878931_ssr726 microsatellite FC878931_ssr726:726..743. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878931_ssr628 microsatellite FC878931_ssr628:628..639. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10586 contig Ccv1_Contig10586:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 4.866e-42
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 2
Query:  242 TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            TSNGDVF KTHDELD EFLGN+ GKPWRFQTN YGNGST RGREERY+LWFDP+K+FHRYSILWT + I+
Sbjct:   97 TSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKII 166          

HSP 2 Score: 60.4622 bits (145), Expect = 4.866e-42
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:   15 GSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGNSL 134
            GSGF+SS +Y HGF+S+MIKLP+D+TAG+ VAFY S   +
Sbjct:   63 GSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDV 102          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-40
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 2
Query:  242 TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            TSNGDVF K HDELD EFLGN+ GKPWRFQTN YGNGST RGREERY+LWFDP+K+FHRYSILWT   I+
Sbjct:  105 TSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKII 174          

HSP 2 Score: 59.6918 bits (143), Expect = 1.165e-40
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 3
Query:   15 GSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGNSLSIK 143
            GSGF+SS +Y HGFFS++IKLP  +TAG+ VAFY S   + +K
Sbjct:   71 GSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVK 113          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.978e-36
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  245 SNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM*VFF 463
            SNGD++ K HDE+DFEFLGN+  K WR QTN YGNGST  GREERY LWFDPT+ FH+YSILW+ ++I  +FF
Sbjct:   97 SNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHI--IFF 167          

HSP 2 Score: 58.9214 bits (141), Expect = 5.978e-36
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 3
Query:   15 GSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGNSL 134
            GSGFVS+  Y HGFFSA IKLPSD+TAG+ VAFY+S   +
Sbjct:   62 GSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDM 101          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.721e-35
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  245 SNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            SNGD++ K HDE+DFEFLGN+ G+ WR QTN YGNGST  GREERY LWFDPT+ FH+YSILW+ ++I+
Sbjct:   97 SNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHII 165          

HSP 2 Score: 56.6102 bits (135), Expect = 1.721e-35
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:   15 GSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGNSL 134
            GSGFVS+ +Y HGFFS+ IKLP+D++AG+ +AFY+S   L
Sbjct:   62 GSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDL 101          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.100e-21
Identity = 45/100 (45.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  245 SNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTAR---GREERYQLWFDPTKQFHRYSILWTSNNIM*VFFS*QTCFQGYNTLQSG*Y-TRPNYL 532
            SN    P  HDE+D EFLG   GKP+  QTN +  GS  R   GRE ++ LWFDPT+ FH Y+ILW  N I  VFF      + YN      + TRP ++
Sbjct:  103 SNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQI--VFFVDDVPIRTYNRKNEAIFPTRPMWV 200          

HSP 2 Score: 38.891 bits (89), Expect = 6.100e-21
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:    9 SLGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGN 128
            S GSGF S + Y  G+F A IKL    TAG+  + Y+S N
Sbjct:   66 STGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNN 105          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.841e-20
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  245 SNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGS---TARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            SN +  P  HDE+D EFLG   GKP+  QTN Y  GS      GRE +++LWFDPTK FH Y+ILW+   I+
Sbjct:  107 SNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREII 178          

HSP 2 Score: 38.891 bits (89), Expect = 3.841e-20
Identity = 18/38 (47.37%), Postives = 24/38 (63.16%), Query Frame = 3
Query:   15 GSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVSGN 128
            GSGF S K +  G+F A IKL   +TAG+  + Y+S N
Sbjct:   72 GSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNN 109          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.420e-19
Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  242 TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            TS GD    THDE+DFEFLGN  GKP   QTN + NG    GRE+++  WFDPT  FH Y ILW    I+
Sbjct:   98 TSKGD----THDEVDFEFLGNRQGKPIAIQTNVFSNGQ--GGREQKFVPWFDPTTSFHTYGILWNPYQIV 161          

HSP 2 Score: 39.6614 bits (91), Expect = 2.420e-19
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 3
Query:    9 SLGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYVS 122
            S GSGF S   Y  GFF   IKLP   +AG+  AFY++
Sbjct:   61 SSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLT 98          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  245 SNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNN 445
            SN + +PK+HDE+D E LG      W  QTN Y NGST  GREE++  WFDPT+ FH Y+++W S++
Sbjct:  107 SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHH 173          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  272 HDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM 451
            H+E DFEFLGN  G+P+  QTN Y NG     RE+R  LWFDPT +FH YSILW+  +++
Sbjct:   99 HNEFDFEFLGNTTGEPYIVQTNIYVNG--VGNREQRLNLWFDPTTEFHTYSILWSKRSVV 156          
BLAST of FC878931 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  275 DELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIM*VFF 463
            DE+DFEFLGN  G+P+  QTN Y NG+    RE R+ LWFDPTK +H YSILW  NN   VFF
Sbjct:  101 DEIDFEFLGNRTGQPYIIQTNVYKNGTG--NREMRHSLWFDPTKDYHTYSILW--NNHQLVFF 159          
The following BLAST results are available for this feature:
BLAST of FC878931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
XTH30_ARATH4.866e-4281.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.165e-4080.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH5.978e-3667.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.721e-3568.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH6.100e-2145.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH3.841e-2051.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH2.420e-1954.29Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH33_ARATH1.162e-1650.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH2.051e-1355.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ARATH2.051e-1360.32Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878931 ID=FC878931; Name=FC878931; organism=Citrus clementina; type=EST; length=888bp
CAATTTTGTCACTAGGGTCGGGTTTTGTTTCGTCAAAGTTGTACAATCAC
GGGTTCTTTAGCGCGATGATCAAGTTGCCATCGGATCACACGGCTGGCTT
ATGCGTTGCATTCTATGTAAGCGGCAATTCATTGTCAATAAAGCTTCTTT
TGCTAGCTTCTGGAATGTTTACTGTTCAGCGAACGGCCTTTTAATGTATA
AAATATTTATCGTTGATTTGTTTTTTTTTTTTCCATTTCAGACGTCAAAC
GGAGACGTGTTCCCAAAAACACACGACGAATTAGACTTTGAGTTTCTAGG
AAACGTGGCTGGAAAACCGTGGAGGTTCCAAACAAATTTCTATGGAAATG
GGAGCACGGCACGTGGCAGAGAAGAGAGATACCAGCTTTGGTTTGATCCC
ACGAAGCAATTTCATAGATATAGCATTCTTTGGACAAGCAACAACATTAT
GTGAGTTTTCTTTTCTTAACAAACTTGTTTCCAAGGGTACAATACCCTAC
AGTCTGGGTAATATACTCGACCTAATTATTTGATAATACCGAGAAAATAT
GACATAATACAACTTAATTATTTGATAGTATCGAGATTATAGGGTATAAT
CCCTGAGAAACCCGTTGTCGACTTTTTTTATTATTATTATAACATATTTA
TTCTTGGATGTTTGCTTTGCTTGCTTTTTTTTTTTTTTTTTTTTTTTGAC
TTTAAATGTGAATTTGACAAATTAAAGAGAGAGAGAGAGAGAGGGTGGCG
TTTGCGTGTGGAATGTGTTAAATGCATGACATTAAAACTTGTGGACCAAG
GATTACACGCCTAAATCAATATCGATTTTTAGCCTGATTTTAAGGCCAAC
TTTTCCTCTTTGTTTGAAATTTCCCATTAATGAGGCCT
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