FC878933
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19 Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = 3 Query: 453 QKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEAS 791 Q+ K+ + + E Q +E +K +D LI+ +Q LP+ L IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+ +K L+ S Sbjct: 4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS 116
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16 Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 3 Query: 387 MEEPTAKGTVTSISSMFPVDDVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794 ME P S ++ +V + + + ++ Q++++ K+ +D L + LP++L ++IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F Sbjct: 1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEF 136
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15 Identity = 39/116 (33.62%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 447 DVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794 DV + + + ++ Q+ ++ K+ +D L + LP++L ++IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F Sbjct: 29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEF 144
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15 Identity = 35/116 (30.17%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 447 DVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794 +V + + + ++ Q++++ ++ +D + L ++ LP++L +D+MVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D K ++K+ ++ F Sbjct: 27 EVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEF 142 The following BLAST results are available for this feature:
BLAST of FC878933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878933 ID=FC878933; Name=FC878933; organism=Citrus clementina; type=EST; length=818bpback to top |