FC878933

Overview
NameFC878933
Unique NameFC878933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878933_ssr371 microsatellite FC878933_ssr371:371..382. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13425 contig Ccv1_Contig13425:73..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = 3
Query:  453 QKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEAS 791
            Q+  K+ +  + E Q  +E +K   +D   LI+ +Q LP+ L   IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+  +K L+   S
Sbjct:    4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS 116          
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  387 MEEPTAKGTVTSISSMFPVDDVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794
            ME P       S ++     +V +  +  +  ++  Q++++  K+  +D   L   +  LP++L ++IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F
Sbjct:    1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEF 136          
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 39/116 (33.62%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  447 DVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794
            DV +  +  +  ++  Q+ ++  K+  +D   L   +  LP++L ++IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F
Sbjct:   29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEF 144          
BLAST of FC878933 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 35/116 (30.17%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  447 DVQKAAKRVQDALSEKQQELERVKEFISDNTNLINLVQKLPEELHHDIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASF 794
            +V +  +  +  ++  Q++++  ++  +D + L   ++ LP++L +D+MVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D  K ++K+ ++   F
Sbjct:   27 EVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEF 142          
The following BLAST results are available for this feature:
BLAST of FC878933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RMP_DICDI1.687e-1940.71RNA polymerase II subunit 5-mediating protein homo... [more]
RMP_BOVIN6.633e-1630.88Unconventional prefoldin RPB5 interactor OS=Bos ta... [more]
RMP_HUMAN1.478e-1533.62Unconventional prefoldin RPB5 interactor OS=Homo s... [more]
RMP_MOUSE9.578e-1530.17Unconventional prefoldin RPB5 interactor OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA87BA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878933 ID=FC878933; Name=FC878933; organism=Citrus clementina; type=EST; length=818bp
TGACATGCACGCTGCTGGCATAGAGCCTGCACAGTGGCAGCCGAGCACGG
CAGCACCAAGCCACTAACAGCTCCTTTCTCTCTCAACTCACTCTCACACG
CATGCAGCATTAAGCCGACATCACCAACCCCCCTTTCTCTCGCGCTCGCT
CTCACACTCCATCTTCGTCACCATATCACCCTCTGGTCTGAACTATTTGC
CATCGCAGCCTCTTTCAACTGTTGCGATCTCAATGGCTGTCGGAGACATT
TAAAAGGATGCACGATTGGTAGTTGATGCAAAATTTGTTGCATTTTGCCA
ATTTTCTTGGGAGTTTTAGGGCCTGTTCGGTAAACTTAACAGATCAAAAC
CCACTTCAGAGAATCAATCAAATCAATCAATCAGTAATGGAAGAGCCAAC
AGCGAAAGGAACAGTGACTTCGATCTCGTCCATGTTTCCAGTCGACGACG
TGCAGAAAGCAGCTAAGCGCGTGCAGGACGCGCTGTCGGAGAAGCAGCAG
GAGCTTGAGCGAGTTAAGGAATTCATCAGTGATAACACAAACCTCATTAA
CCTCGTCCAGAAACTTCCCGAAGAACTTCACCATGATATCATGGTTCCTT
TTGGAAAAGCAGCATTTTTTCCTGGGCGTTTGATACATACCAATGAGTTT
ATGGTTCTTTTGGGAGAAGGGTATTATGCAGAGAGAACATCCAAGCAAAC
TGTTGAGATTTTGAAGAGGAGGGGGAAGGTCTTGGATTCCCAGGTTGATT
CTCTCAAAGCCATGATGAAGGATCTTCAAGCCGAGGCTTCATTTTTTGAT
ACTACAGCTTCTGAAGCA
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