FC878935

Overview
NameFC878935
Unique NameFC878935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878935_ssr791 microsatellite FC878935_ssr791:791..800. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12722 contig Ccv1_Contig12722:114..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_PONAB (UPF0549 protein C20orf43 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.921e-27
Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_HUMAN (UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.921e-27
Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_MACFA (UPF0549 protein C20orf43 homolog OS=Macaca fascicularis GN=QccE-12445 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 68/168 (40.48%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG  E++ VL+ RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_RAT (UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.590e-27
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L+ RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKATSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_BOVIN (UPF0549 protein C20orf43 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ R+
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRI 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_PIG (UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26
Identity = 66/168 (39.29%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++++L+ RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_MOUSE (UPF0549 protein C20orf43 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26
Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L++RM
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_CHICK (UPF0549 protein C20orf43 homolog OS=Gallus gallus GN=RCJMB04_16p11 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 65/168 (38.69%), Postives = 99/168 (58.93%), Query Frame = 3
Query:  345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ----YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            +K  K+D   + +++W  C LS E L  P V  +LG ++NK+A++  LL K+  K      S+IK LK++  + L+  P   G +E+  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NGN+E++ VL++RM
Sbjct:   19 RKAVKVDKTAELVARWYYCTLSQEKLCRPIVACELGRLYNKDAVIEFLLDKSADKTPMEAASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRM 186          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: U549_DICDI (UPF0549 protein OS=Dictyostelium discoideum GN=DDB_G0288549 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  321 CYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNL--PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVKSS-----------------------SCLVCHEEFGEMDKILINGNEEEISVLR 794
            C L    +K+    D ++    KW  CAL+ + L EP V+D LG +FNK+ ++ ALL+ +L   K +S+I+ L+ +  V  S  P  E++     + CPIT +E  +  Y+F  ++TCGHV S KA KE+K+                        SC +C +E+   D I IN + EE   ++
Sbjct:   12 CELVKTKKKEVKVFDKDQVDFGKWFLCALAQDTLSEPIVLDDLGNLFNKDNIIEALLNGSLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGSSNYKFKFLKTCGHVFSEKAFKELKNDDSNNNNNNNNNNKKEIDSSKDNLSCFLCSKEYITNDLITINPSGEEFEQMK 195          
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: YAT9_SCHPO (UPF0549 protein C1D4.09c OS=Schizosaccharomyces pombe GN=SPAC1D4.09c PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 50/160 (31.25%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  345 KKPDKIDP------NEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803
            K+P K+ P         + S++  CA+++EPL  P V   LG ++NK +++  LL ++ +PK  S+IK LKD++ +++       ++   + + CPIT    +  Y+F  +  CGHV    ALK+     C  C++ + E D I IN N E++  L +R+
Sbjct:   16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSHIKSLKDVVQLQVEL-----DDSGKVLWLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRL 170          
The following BLAST results are available for this feature:
BLAST of FC878935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CT043_PONAB1.921e-2740.48UPF0549 protein C20orf43 homolog OS=Pongo abelii P... [more]
CT043_HUMAN1.921e-2740.48UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf... [more]
CT043_MACFA2.509e-2740.48UPF0549 protein C20orf43 homolog OS=Macaca fascicu... [more]
CT043_RAT5.590e-2739.29UPF0549 protein C20orf43 homolog OS=Rattus norvegi... [more]
CT043_BOVIN9.535e-2739.29UPF0549 protein C20orf43 homolog OS=Bos taurus PE=... [more]
CT043_PIG1.245e-2639.29UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=... [more]
CT043_MOUSE1.245e-2638.69UPF0549 protein C20orf43 homolog OS=Mus musculus P... [more]
CT043_CHICK4.732e-2638.69UPF0549 protein C20orf43 homolog OS=Gallus gallus ... [more]
U549_DICDI5.067e-2032.07UPF0549 protein OS=Dictyostelium discoideum GN=DDB... [more]
YAT9_SCHPO1.802e-1731.25UPF0549 protein C1D4.09c OS=Schizosaccharomyces po... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA41AA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878935 ID=FC878935; Name=FC878935; organism=Citrus clementina; type=EST; length=890bp
CCGATCTATTCTAAATTCAACAATCCCAAAACAGAATGCGTTCCAAAACC
CAAATTTTCATCAAATCCCCATCAAATTCTCTGAAAACCCTAACCGTAGG
CGCAAACCAATTCGAAACGCTAAACCACCTCAAACGCTCTCTCCTTTCAC
TGGACCAGTCTCTCTCGTCTCTTTATTTCACTCTCAATGGAAAAATCCTC
GACGAGTCGACCCCGCTTTTCAAAAATCCCCAAATTGCCCCTCTTTCTAC
CCTGTATTTACGCCAGCGAGTTTTTGGTGGCGGTGGAGATGGCGGCGCCA
CCGGAGCTGAGTCACGAGATTGTTATCTCAACATGTATGCGGAGAAAAAA
CCAGATAAAATCGACCCAAATGAGCAAAGGCTCTCGAAATGGTGTAACTG
CGCGTTATCGAATGAGCCGTTGAGGGAACCATGCGTTATCGATAAATTAG
GTACCATCTTTAATAAAGAAGCGCTTGTTCATGCTTTGTTGAGTAAGAAT
TTGCCTAAGCAGTATAGTTATATAAAGGGTTTGAAGGATTTGATCAATGT
GAAGCTTTCGAGGGTCCCTGGAGCAGAAGAGAATGGTGATGGTATTAGGT
TTCAGTGCCCGATAACAGGACTAGAGTTTAATGGGAAGTATAGGTTTGTA
GCAATGAGAACTTGTGGGCATGTGTTGAGTACTAAAGCACTGAAAGAGGT
GAAATCATCCTCATGTTTGGTTTGCCATGAGGAGTTTGGGGAAATGGATA
AGATTCTGATTAATGGGAATGAAGAAGAGATCTCGGTGTTGAGAGAGAGA
ATGGAAGAAGAGAAGTTGAAAGTTAAGGAAAAGAAGGTGAAGAAAGTGAA
GAATGGTGAAGACTGTGTGGATGAAGATGTGGCTGTGCAT
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