FC878935
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_PONAB (UPF0549 protein C20orf43 homolog OS=Pongo abelii PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.921e-27 Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+IK +K++ +KLS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++ VL+ RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_HUMAN (UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.921e-27 Identity = 68/168 (40.48%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+IK +K++ +KLS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++ VL+ RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_MACFA (UPF0549 protein C20orf43 homolog OS=Macaca fascicularis GN=QccE-12445 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27 Identity = 68/168 (40.48%), Postives = 100/168 (59.52%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+IK +K++ +KLS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG E++ VL+ RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_RAT (UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.590e-27 Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+I+ +K++ +KLS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++ +L+ RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKATSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_BOVIN (UPF0549 protein C20orf43 homolog OS=Bos taurus PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27 Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+IK +K++ ++LS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++ VL+ R+ Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRI 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_PIG (UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26 Identity = 66/168 (39.29%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+IK +K++ ++LS P E + GD RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++++L+ RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_MOUSE (UPF0549 protein C20orf43 homolog OS=Mus musculus PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26 Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 KK +K+D + + +++W C LS E LR P V +LG ++NK+A++ LL K+ L K S+I+ +K++ ++LS P G + N G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NG +E++ +L++RM Sbjct: 19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: CT043_CHICK (UPF0549 protein C20orf43 homolog OS=Gallus gallus GN=RCJMB04_16p11 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 65/168 (38.69%), Postives = 99/168 (58.93%), Query Frame = 3 Query: 345 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ----YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 +K K+D + +++W C LS E L P V +LG ++NK+A++ LL K+ K S+IK LK++ + L+ P G +E+ G RF CP+ GLE NG++RF +R CG V S +ALKE+K+ C C F E D I++NGN+E++ VL++RM Sbjct: 19 RKAVKVDKTAELVARWYYCTLSQEKLCRPIVACELGRLYNKDAVIEFLLDKSADKTPMEAASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRM 186
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: U549_DICDI (UPF0549 protein OS=Dictyostelium discoideum GN=DDB_G0288549 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20 Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 3 Query: 321 CYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNL--PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVKSS-----------------------SCLVCHEEFGEMDKILINGNEEEISVLR 794 C L +K+ D ++ KW CAL+ + L EP V+D LG +FNK+ ++ ALL+ +L K +S+I+ L+ + V S P E++ + CPIT +E + Y+F ++TCGHV S KA KE+K+ SC +C +E+ D I IN + EE ++ Sbjct: 12 CELVKTKKKEVKVFDKDQVDFGKWFLCALAQDTLSEPIVLDDLGNLFNKDNIIEALLNGSLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGSSNYKFKFLKTCGHVFSEKAFKELKNDDSNNNNNNNNNNKKEIDSSKDNLSCFLCSKEYITNDLITINPSGEEFEQMK 195
BLAST of FC878935 vs. ExPASy Swiss-Prot
Match: YAT9_SCHPO (UPF0549 protein C1D4.09c OS=Schizosaccharomyces pombe GN=SPAC1D4.09c PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17 Identity = 50/160 (31.25%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 345 KKPDKIDP------NEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 803 K+P K+ P + S++ CA+++EPL P V LG ++NK +++ LL ++ +PK S+IK LKD++ +++ ++ + + CPIT + Y+F + CGHV ALK+ C C++ + E D I IN N E++ L +R+ Sbjct: 16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSHIKSLKDVVQLQVEL-----DDSGKVLWLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRL 170 The following BLAST results are available for this feature:
BLAST of FC878935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878935 ID=FC878935; Name=FC878935; organism=Citrus clementina; type=EST; length=890bpback to top |