FC878938

Overview
NameFC878938
Unique NameFC878938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4771 contig Ccv1_Contig4771:17..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILR1_ARATH (IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.309e-84
Identity = 154/257 (59.92%), Postives = 193/257 (75.10%), Query Frame = 3
Query:  120 IIVSTIFTCNPTWAKKETQSGSEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            +I  T F   P  +     SGS  L SL R +L SA++PEFFEWMR IRR+IHENPE GF+E++TSQLVR ELDSLG++Y +PVAKTG+VA +GS  +P FGLRA+MDALP+QE+VEWE KSK +GKMH CGHD H  +LLGAA+LL+     +KGTVKLVFQPGEEGY GAY M+K+  +D   G+  +H+ P +P+G IGSRPG +LAG+G FT  + G+G HAA P  ++DPVLAAS A++ L  IVSRE DPL
Sbjct:    9 VIFVTFFFLPPLSSAGSYDSGSG-LESLARGMLHSAKDPEFFEWMRGIRRKIHENPETGFQEFKTSQLVRDELDSLGVKYKYPVAKTGVVAWIGSCSKPVFGLRADMDALPLQELVEWESKSKVDGKMHACGHDTHVAMLLGAAKLLQTTKHLIKGTVKLVFQPGEEGYAGAYEMLKDEILDDLDGILSVHVFPSIPSGGIGSRPGTVLAGAGLFTVTVHGQGSHAATPHFSKDPVLAASSAVVALQQIVSRELDPL 264          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL3_ORYSJ (IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.890e-83
Identity = 148/234 (63.25%), Postives = 182/234 (77.78%), Query Frame = 3
Query:  195 SSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASV--GSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            ++L RELL++AR PEF  W+R +RRRIH++PEL F+E+ TS LVR+ELD+LG+ Y WPVA+TG+VA+V   +G  P FGLRA+MDALPIQEMVEWE KS  +GKMH CGHDVH  +LLGAA+LL+ R D   G VKLVFQP EEGY G YY+++EGAVD  QG+FG+H+   LP G + SRPGP LAGS RFTA I GKGGHAA P    DP++A S A+L+L  IV+RETDPL
Sbjct:    7 TTLGRELLEAARAPEFAGWLRGLRRRIHQHPELAFQEHRTSALVRAELDALGVAYVWPVAQTGVVATVVGAAGPGPVFGLRADMDALPIQEMVEWEFKSLEDGKMHACGHDVHVAMLLGAAKLLQSRRDHFNGKVKLVFQPAEEGYAGGYYVLEEGAVDDVQGIFGMHVDAGLPAGVVASRPGPFLAGSARFTATINGKGGHAAAPHHAVDPIVAVSSAVLSLQQIVARETDPL 240          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL9_ORYSJ (IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 5.148e-81
Identity = 142/230 (61.74%), Postives = 176/230 (76.52%), Query Frame = 3
Query:  210 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGE---PWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            +LL +AREP   EW+R +RRRIH +PEL FEE  TS+LVR+ELD++G+ Y WPVA+TG+VA++  GG    P   LRA+MDALP+QE+V+WEHKS+ NGKMH CGHD HT +LLGAA+LL+ R + LKGTVKLVFQP EEG  GAYY+++EG +D    MFG+H+ P LP G + +RPGP  A SGRF A I GKGGHAA P D  DPV+AAS AIL+L  IV+RE DPL
Sbjct:   38 DLLAAAREPGMAEWLRGVRRRIHRHPELAFEEVRTSELVRAELDAIGVPYQWPVARTGVVATIAGGGGGDGPVVALRADMDALPVQELVDWEHKSQENGKMHACGHDAHTAMLLGAAKLLQKRKNELKGTVKLVFQPAEEGSAGAYYVLQEGVLDDVSAMFGMHVDPALPVGVVAARPGPFAATSGRFLATITGKGGHAAFPHDAIDPVVAASNAILSLQQIVAREIDPL 267          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSJ (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.163e-79
Identity = 143/226 (63.27%), Postives = 175/226 (77.43%), Query Frame = 3
Query:  213 LLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            LL  A+E EF  WM  +RRRIHENPELG+EE+ TS+LVR ELD+LGI Y  P A TG+VA+VG+GG P+  LRA+MDALP+QE VEWEHKSK  GKMHGCGHD H  +LLG+AR+L+   D LKGTV LVFQP EEG GGA  MI +GAV+  + +FG+H++ V+P G + SRPGP++AGSG F AVI GKGGHAA+P  T DP+LAAS  I++L  +VSRE DPL
Sbjct:   36 LLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSELVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESVEWEHKSKVPGKMHGCGHDAHVAMLLGSARILQEHRDELKGTVVLVFQPAEEGGGGAKKMIDDGAVENIEAIFGVHVADVVPIGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSI (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.292e-79
Identity = 142/226 (62.83%), Postives = 174/226 (76.99%), Query Frame = 3
Query:  213 LLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            LL  A+E EF  WM  +RRRIHENPELG+EE+ TS+LVR ELD+LGI Y  P A TG+VA+VG+GG P+  LRA+MDALP+QE VEWEHKSK  GKMHGCGHD H  +LLG+AR+L+   D LKGTV LVFQP EEG GGA  MI +G V+  + +FG+H++ V+P G + SRPGP++AGSG F AVI GKGGHAA+P  T DP+LAAS  I++L  +VSRE DPL
Sbjct:   36 LLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSELVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESVEWEHKSKVPGKMHGCGHDAHVAMLLGSARILQEHRDELKGTVVLVFQPAEEGGGGAKKMIDDGTVENIEAIFGVHVADVVPIGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL7_ORYSJ (IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.073e-78
Identity = 139/231 (60.17%), Postives = 177/231 (76.62%), Query Frame = 3
Query:  210 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASV----GSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            ELL +AR P F  W+R +RR IH +PEL FEE  TS+LVR+ELD++G+ Y WPVA+TG+VA++    G+G    F LRA+MDALP+QE+V+WEHKS+ +GKMH CGHD HTT+LLGAA+LL+ + D LKGTVKLVFQP EEGY GA Y+++EG +D    +FG+H+ P +  GT+ SRPGP LA SGRF A I GKGGHAA P +  DP+L AS AI++L  IV+RETDPL
Sbjct:   52 ELLSAARAPGFAAWLRGLRRSIHRHPELAFEEVRTSELVRAELDAIGVPYEWPVARTGVVATIAGGDGAGAGTVFALRADMDALPLQELVDWEHKSEESGKMHACGHDAHTTMLLGAAKLLQSQKDDLKGTVKLVFQPAEEGYAGARYVLQEGVLDDVSAIFGLHVDPRIQVGTVTSRPGPFLAASGRFLATITGKGGHAAGPHNAVDPILTASSAIVSLQQIVARETDPL 282          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL5_ARATH (IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsis thaliana GN=ILL5 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.005e-76
Identity = 141/236 (59.75%), Postives = 175/236 (74.15%), Query Frame = 3
Query:  183 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            S  LS + +  L  A+  +FF+WM  IRRRIHENPELG+EE ETS+LV++ELD +G+ Y  PVA TG++  VG+G  P+  LRA+MDALPIQEMVEWEHKSK  GKMH CGHD HTT+LLGAA+LLK   + L+GTV LVFQP EEG  GA  +++ G ++    +FG+H+S +L  G + SR G L+AGSGRF A I GKGGHAA+PQ   DPVLAAS  IL+L H+VSRE DPL
Sbjct:   25 SNDLSQIPKNFLSLAKREDFFDWMVGIRRRIHENPELGYEEVETSKLVKTELDKMGVSYKNPVAVTGVIGYVGTGHAPFVALRADMDALPIQEMVEWEHKSKIPGKMHACGHDAHTTMLLGAAKLLKEHQEELQGTVILVFQPAEEGGAGAKKIVEAGVLENVGAIFGLHVSNLLGLGQLSSREGLLMAGSGRFKATISGKGGHAALPQFAIDPVLAASNVILSLQHLVSREADPL 260          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 2.238e-76
Identity = 139/236 (58.90%), Postives = 176/236 (74.58%), Query Frame = 3
Query:  183 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            S  LS +  + L  A+  +FF+WM  IRRRIHENPELG+EE ETS+LVR+EL+ +G+ Y +PVA TG+V  VG+G  P+  LRA+MDAL +QEMVEWEHKSK  GKMH CGHD HTT+LLGAA+LLK   + L+GTV LVFQP EEG GGA  +++ G ++    +FG+H++  L  G + SR GP+LAGSG F A I GKGGHAA+PQ T DP+LAAS  I++L H+VSRE DPL
Sbjct:   25 SNGLSQIPSKFLTLAKRNDFFDWMVGIRRRIHENPELGYEEVETSKLVRAELEKMGVSYKYPVAVTGVVGYVGTGHAPFVALRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHTTMLLGAAKLLKEHEEELQGTVVLVFQPAEEGGGGAKKIVEAGVLENVSAIFGLHVTNQLALGQVSSREGPMLAGSGFFKAKISGKGGHAALPQHTIDPILAASNVIVSLQHLVSREADPL 260          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL4_ORYSJ (IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.923e-76
Identity = 140/234 (59.83%), Postives = 178/234 (76.07%), Query Frame = 3
Query:  195 SSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVG--SGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            ++L RELL++AR PEF  W+R +RRRIH++PEL F+E+ TS LVR+ELD+LG+ Y WP+A+TG+VA+V   +G  P F LRA+MDALPIQEMVEWE KS  +GKMH CGHD H  +LL AA+LL+ R D   G VKLVFQP E G GG Y+++KEG +D  Q +F +H++  LP G +GSRPGP LAGS RFTA I GKGGHAA P    DP++AAS A+L+L  IV+RET+PL
Sbjct:    3 TTLGRELLEAARAPEFAGWLRGLRRRIHQHPELAFQEHRTSALVRAELDALGVAYVWPIAQTGVVATVAGAAGPGPVFALRADMDALPIQEMVEWEFKSLEDGKMHACGHDAHVAMLLVAAKLLQSRRDHFNGKVKLVFQPAEGGAGG-YHVLKEGVLDDTQTIFAVHVATDLPAGVVGSRPGPFLAGSARFTATITGKGGHAAEPHLAVDPIVAASSAVLSLQQIVARETNPL 235          
BLAST of FC878938 vs. ExPASy Swiss-Prot
Match: ILL2_ORYSJ (IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sativa subsp. japonica GN=ILL2 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.232e-75
Identity = 140/227 (61.67%), Postives = 170/227 (74.89%), Query Frame = 3
Query:  210 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPIQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRIDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTIGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL*HIVSRETDPL 890
            ++LD AR PEF  WM  +R  IHE PEL FEE ETS+LVR+ELD++G+ Y  PVA TG+VA+VG+G  P+  LRA+MDALP+QE V+WEHKSK   KMH CGHD HTT+LLGAAR+L+ R   L+GTV L+FQPGEE   GA  M++ GAVD  + +FG H+S  LPTG +GSRPGPLLAG G F AVI GKGGHAA P  + DP+LAAS  +L L  +VSRE DPL
Sbjct:   49 DVLDRARRPEFAAWMAGVRWAIHERPELAFEEIETSRLVRAELDAMGVAYRHPVAGTGVVATVGTGRPPFVALRADMDALPMQEEVQWEHKSKVAMKMHACGHDAHTTMLLGAARILQERRHELQGTVVLLFQPGEEVGTGARRMVEAGAVDNVEAIFGFHVSVELPTGVVGSRPGPLLAGCGFFEAVITGKGGHAAHPHASVDPILAASTVVLALQGLVSREADPL 275          
The following BLAST results are available for this feature:
BLAST of FC878938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
ILR1_ARATH1.309e-8459.92IAA-amino acid hydrolase ILR1 OS=Arabidopsis thali... [more]
ILL3_ORYSJ1.890e-8363.25IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sati... [more]
ILL9_ORYSJ5.148e-8161.74IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sati... [more]
ILL1_ORYSJ2.163e-7963.27IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL1_ORYSI6.292e-7962.83IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL7_ORYSJ1.073e-7860.17IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sati... [more]
ILL5_ARATH1.005e-7659.75IAA-amino acid hydrolase ILR1-like 5 OS=Arabidopsi... [more]
ILL4_ARATH2.238e-7658.90IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]
ILL4_ORYSJ2.923e-7659.83IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sati... [more]
ILL2_ORYSJ3.232e-7561.67IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BH07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878938 ID=FC878938; Name=FC878938; organism=Citrus clementina; type=EST; length=890bp
AGAGTGTAGCGTACAGAACTGAGAAAATTTTAATTTTATAAATAGAAAAT
TCAAGCTATTTTGTACCGCAAATTTTTCACAAAATGTATCTAATGCTATT
GGCTCGTCTCTGTCTTTTGATTATCGTATCAACGATATTTACATGCAATC
CCACATGGGCCAAGAAGGAAACTCAGTCGGGATCGGAGCAGCTGAGTTCG
TTGACTCGGGAGCTGTTGGACTCAGCGAGGGAGCCCGAGTTCTTTGAGTG
GATGAGGAGGATTAGGAGGAGAATACACGAGAATCCGGAGTTGGGTTTTG
AAGAGTACGAGACGAGCCAACTCGTAAGATCGGAGCTTGACTCGCTTGGG
ATTGAGTACACGTGGCCGGTTGCCAAGACTGGGATCGTGGCTTCAGTGGG
TTCAGGGGGTGAACCCTGGTTCGGTCTTAGAGCTGAGATGGACGCCCTGC
CTATTCAGGAAATGGTAGAGTGGGAGCATAAGAGCAAGAACAATGGTAAA
ATGCATGGTTGTGGCCACGATGTTCACACAACCATACTGCTTGGGGCAGC
TAGGCTACTCAAACACAGAATAGACAGATTAAAGGGCACGGTTAAGCTTG
TCTTCCAACCTGGGGAAGAAGGTTATGGCGGCGCATACTATATGATAAAA
GAAGGTGCTGTTGATAAGTTTCAGGGCATGTTTGGAATACATATTTCCCC
AGTACTGCCCACTGGTACAATTGGCTCAAGACCTGGTCCTTTACTAGCTG
GTTCTGGGAGGTTTACAGCCGTGATTAAAGGAAAAGGTGGACATGCCGCC
ATGCCCCAAGATACCAGAGATCCTGTTCTTGCAGCATCCTTTGCCATCCT
CACACTCTAACATATAGTTTCAAGAGAGACAGATCCTCTG
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