FC878939

Overview
NameFC878939
Unique NameFC878939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15425 contig Ccv1_Contig15425:411..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX5_ARATH (Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 5.595e-91
Identity = 177/263 (67.30%), Postives = 204/263 (77.57%), Query Frame = 1
Query:   61 ASKLLLTFAICRLIVTVGLTMDPTELLRLG---VYGQLSVDPSDVQTASLDFGML-SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTS-NGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFSTLPE 834
            +S LLLTFAIC+LI+ VGL + P+ELLR+G   V G  +V PSD+ + S DFGML S  EP AVLHP+SA+D+ R+V+ AY S A  F +SARGHGHSINGQA    NGVV++M           TP   +P V   E YVDVWGGELW+DVL+ TLEHGLAPKSWTDYLYL+VGGTLSNAGISGQAFH GPQI+NV ELDVVTGKGE++ CSEE+N+ LFH VLGGLGQFGIITRARISLEPAP+RVRWIRVLYS F    E
Sbjct:    7 SSFLLLTFAICKLIIAVGLNVGPSELLRIGAIDVDGHFTVHPSDLASVSSDFGMLKSPEEPLAVLHPSSAEDVARLVRTAYGS-ATAFPVSARGHGHSINGQAAAGRNGVVVEMNHGVTG-----TP---KPLVRPDEMYVDVWGGELWVDVLKKTLEHGLAPKSWTDYLYLTVGGTLSNAGISGQAFHHGPQISNVLELDVVTGKGEVMRCSEEENTRLFHGVLGGLGQFGIITRARISLEPAPQRVRWIRVLYSSFKVFTE 260          

HSP 2 Score: 23.0978 bits (48), Expect = 5.595e-91
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  825 FTRDQEYLISL 857
            FT DQEYLIS+
Sbjct:  258 FTEDQEYLISM 268          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX1_ARATH (Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.755e-65
Identity = 130/233 (55.79%), Postives = 166/233 (71.24%), Query Frame = 1
Query:  130 TELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVK-AAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYE-KERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 822
            + L+ L + G +S D  DV   + DFG   +  P A+LHP S  DI+ ++K   +       T++ARGHGHS+ GQA    GVVI+M                   +Y+ K+ YVDV GGE+WI++LR TL++GL+PKSWTDYL+L+VGGTLSNAGISGQAF  GPQI NV++L++VTGKGE++TCSE++NS LF +VLGGLGQFGIITRARISLEPAP  V+WIRVLYSDFS
Sbjct:   57 SSLVSLDLEGYISFD--DVHNVAKDFGNRYQLPPLAILHPRSVFDISSMMKHIVHLGSTSNLTVAARGHGHSLQGQALAHQGVVIKMESLRSPDI----------RIYKGKQPYVDVSGGEIWINILRETLKYGLSPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQINNVYQLEIVTGKGEVVTCSEKRNSELFFSVLGGLGQFGIITRARISLEPAPHMVKWIRVLYSDFS 277          

HSP 2 Score: 23.483 bits (49), Expect = 1.755e-65
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  816 FFNFTRDQEYLIS 854
            F  F+RDQEYLIS
Sbjct:  276 FSAFSRDQEYLIS 288          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX1_MAIZE (Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.946e-62
Identity = 121/232 (52.16%), Postives = 159/232 (68.53%), Query Frame = 1
Query:  127 PTELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 822
            P  L  L + G+L  D +    AS DFG ++ A P AVL+P+S  D+  ++ AA  +    +TI+ RG GHS+ GQA    GVV+ M             A  R +V    RYVD  G ++WIDVLR++L  G+AP+SW DYLYL+VGGTLSNAGISGQAF  GPQI+NV E+DV+TG GE++TCS++ N+ LF AVLGGLGQFG+ITRARI++EPAP R RW+R +Y+DF+
Sbjct:   35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGD------AAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWNDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFA 260          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX3_ARATH (Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.254e-61
Identity = 130/267 (48.69%), Postives = 167/267 (62.55%), Query Frame = 1
Query:   34 LAEKELLSMASKLLLTFAICRLI---VTVGLTMDPTELLRLGVY-GQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 822
            +A   L S    + +T  I   +   +T   +  P  +L    + G+L+   S V++A+ DFG +++  P AVL P+S +DIT ++K +++S+   F ++ARGHGHS  GQA   +GVV+ M                         YVDV    LWI+VL  TLE GL P SWTDYLYL+VGGTLSN GISGQ F  GPQITNV E+DV+TGKGE+ TCS++ NS LF AVLGGLGQFGIITRARI LE APKR +W+R LY DFS
Sbjct:    1 MASYNLRSQVRLIAITIVIIITLSTPITTNTSPQPWNILSHNEFAGKLTSSSSSVESAATDFGHVTKIFPSAVLIPSSVEDITDLIKLSFDSQL-SFPLAARGHGHSHRGQASAKDGVVVNMRSMVNRDRGIKVSRTCL--------YVDVDAAWLWIEVLNKTLELGLTPVSWTDYLYLTVGGTLSNGGISGQTFRYGPQITNVLEMDVITGKGEIATCSKDMNSDLFFAVLGGLGQFGIITRARIKLEVAPKRAKWLRFLYIDFS 258          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX2_ARATH (Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.728e-59
Identity = 124/259 (47.88%), Postives = 167/259 (64.48%), Query Frame = 1
Query:   58 MASKLLLTFAICRLIVTV---GLTMDPTELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFST 825
            MA+  L+   I  L++T    G+ +D  + L L     LS DPS +  AS DFG ++   P  V+ P+S  DI+R+++ A   ++  F ++ARG GHS+NGQA  S GV++ M                   V + ++Y DV  G LW+DVL+ T E G++P SWTDYL+++VGGTLSN GI GQ F  GP ++NV ELDV+TGKGE+LTCS + N  LF+ VLGGLGQFGIITRARI L+ APKR +W R+LYSDF+T
Sbjct:    1 MANLRLMITLITVLMITKSSNGIKIDLPKSLNL----TLSTDPSIISAASHDFGNITTVTPGGVICPSSTADISRLLQYAANGKST-FQVAARGQGHSLNGQASVSGGVIVNMTCITDVV------------VSKDKKYADVAAGTLWVDVLKKTAEKGVSPVSWTDYLHITVGGTLSNGGIGGQVFRNGPLVSNVLELDVITGKGEMLTCSRQLNPELFYGVLGGLGQFGIITRARIVLDHAPKRAKWFRMLYSDFTT 242          

HSP 2 Score: 21.9422 bits (45), Expect = 1.728e-59
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  816 FFNFTRDQEYLISL 857
            F  FT+DQE LIS+
Sbjct:  240 FTTFTKDQERLISM 253          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX4_ARATH (Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana GN=CKX4 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 7.508e-58
Identity = 116/226 (51.33%), Postives = 150/226 (66.37%), Query Frame = 1
Query:  172 DPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAY---------ESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDFS 822
            DP  +  AS DFG ++   P AVL P+S  ++ R+++ A           S A  F ++ARG GHS+ GQA    GVV+ M            PAA+   +     Y DV  G +W+DVL++ ++ G++P +WTDYLYLSVGGTLSNAGI GQ F  GPQI+NVHELDV+TGKGE++TCS + N  LF+ VLGGLGQFGIITRARI+L+ AP RV+W R+LYSDFS
Sbjct:   45 DPFSISAASHDFGNITDENPGAVLCPSSTTEVARLLRFANGGFSYNKGSTSPASTFKVAARGQGHSLRGQASAPGGVVVNMTCLAMAAK----PAAVV--ISADGTYADVAAGTMWVDVLKAAVDRGVSPVTWTDYLYLSVGGTLSNAGIGGQTFRHGPQISNVHELDVITGKGEMMTCSPKLNPELFYGVLGGLGQFGIITRARIALDHAPTRVKWSRILYSDFS 264          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX6_ARATH (Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.806e-58
Identity = 119/218 (54.59%), Postives = 148/218 (67.89%), Query Frame = 1
Query:  130 TELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHG-FTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAP 780
            + L  L + G L  +   V  AS DFG   +  P AVLHP S  DI   ++  +    H   T++ARG GHS+ GQAQT +G+VI M           +  +  P       YVDV GGELWI++L  TL++GLAPKSWTDYL+L+VGGTLSNAGISGQAF  GPQI+NVH+L++VTGKGE+L C++ QNS LF+ VLGGLGQFGIITRARI+LEPAP
Sbjct:   28 SSLKALPLVGHLEFE--HVHHASKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTRHGIVIHMESLHPQKLQVYSVDSPAP-------YVDVSGGELWINILHETLKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVHQLEIVTGKGEILNCTKRQNSDLFNGVLGGLGQFGIITRARIALEPAP 236          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: CKX7_ARATH (Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.120e-56
Identity = 117/226 (51.77%), Postives = 150/226 (66.37%), Query Frame = 1
Query:  145 LGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVL-RSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSDF 819
            L + G++    +    A  DFG ++  +P AV+ P   +DI   VKAA  S+    T++ARG+GHSINGQA    G+V+ M             +       +   +VDV GG LW DVL R   E+GLAP+SWTDYL L+VGGTLSNAG+SGQAF  GPQ +NV ELDVVTG G+++TCSE +NS LF +VLGGLGQFGIITRAR+ L+PAP  VRWIRV+Y++F
Sbjct:   34 LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDK--LTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSG-----GDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEF 252          
BLAST of FC878939 vs. ExPASy Swiss-Prot
Match: FAS5_RHOFA (Uncharacterized oxidoreductase ORF5 in fasciation locus OS=Rhodococcus fascians GN=fas5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 77/215 (35.81%), Postives = 101/215 (46.98%), Query Frame = 1
Query:  172 DPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMXXXXXXXXXXXTPAALRPHVYEKERYVDVWGGELWIDVLRSTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFHQGPQITNVHELDVVTGKGELLTCSEEQNSGLFHAVLGGLGQFGIITRARISLEPAPKRVRWIRVLYSD 816
            D   + +A  DFG    A+P  V+ P +  D+   ++    + A   +++ RG GHS  GQ Q   GVV+ M             A +               G  W DV+ +TL     P   TDYL  +VGGTLS  G  G +   G Q  NV  L VVTG G+   CS   NS LF AV GGLGQFG+I  A I L  A + VR  ++ YS+
Sbjct:    8 DDVHLTSAGADFGNCIHAKPPVVVVPRTVADVQEALRY---TAARNLSLAVRGSGHSTYGQCQADGGVVLDMKRFNTVHDVRSGQATID-------------AGVRWSDVVAATLSRQQTPPVLTDYLGTTVGGTLSVGGFGGSSHGFGLQTDNVDSLAVVTGSGDFRECSAVSNSELFDAVRGGLGQFGVIVNATIRLTAAHESVRQYKLQYSN 206          
The following BLAST results are available for this feature:
BLAST of FC878939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CKX5_ARATH5.595e-9167.30Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana ... [more]
CKX1_ARATH1.755e-6555.79Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana ... [more]
CKX1_MAIZE2.946e-6252.16Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1... [more]
CKX3_ARATH4.254e-6148.69Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana ... [more]
CKX2_ARATH1.728e-5947.88Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana ... [more]
CKX4_ARATH7.508e-5851.33Cytokinin dehydrogenase 4 OS=Arabidopsis thaliana ... [more]
CKX6_ARATH9.806e-5854.59Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana ... [more]
CKX7_ARATH4.120e-5651.77Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana ... [more]
FAS5_RHOFA5.802e-2635.81Uncharacterized oxidoreductase ORF5 in fasciation ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA87BA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878939 ID=FC878939; Name=FC878939; organism=Citrus clementina; type=EST; length=857bp
TGTTGGTGCTGTTTGAACTACCTAGCTATTAAGCTGGCCGAGAAGGAATT
ACTCAGTATGGCGAGTAAGCTTCTTCTAACTTTTGCTATTTGTAGATTAA
TCGTTACCGTAGGATTGACAATGGACCCCACGGAGCTCCTCCGCCTCGGA
GTCTACGGTCAACTAAGCGTCGACCCATCCGACGTGCAAACAGCTTCCCT
TGACTTTGGTATGTTAAGCCGGGCCGAGCCTTGGGCAGTTTTGCACCCAG
CTTCAGCGGATGATATTACTCGGGTGGTCAAAGCGGCCTATGAGTCGGAG
GCTCATGGTTTTACAATCTCGGCCAGGGGTCATGGCCATTCTATTAACGG
ACAGGCACAAACAAGTAATGGGGTTGTGATTCAGATGAGCGGCTCAAGAG
GAAGGCGGCTTGGCTCCTCGACCCCGGCGGCTTTGCGACCTCATGTTTAT
GAAAAGGAGAGATACGTCGACGTTTGGGGAGGAGAGCTTTGGATAGATGT
GTTAAGGAGTACACTTGAACATGGGCTTGCACCAAAATCATGGACTGATT
ACTTGTACCTCTCTGTTGGTGGTACCTTATCGAATGCTGGGATTAGTGGC
CAAGCTTTTCATCAAGGTCCTCAAATTACTAATGTCCATGAGCTTGACGT
CGTTACAGGTAAGGGAGAGCTTTTAACATGTTCAGAAGAACAAAACTCGG
GGTTATTCCATGCTGTTCTTGGTGGTTTAGGGCAATTTGGGATAATCACA
AGGGCGAGAATCAGTCTTGAACCAGCACCAAAAAGGGTGAGGTGGATCCG
AGTATTGTATTCAGATTTTTCAACTTTACCAGAGACCAAGAATATCTGAT
CTCTTTG
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