FC878940

Overview
NameFC878940
Unique NameFC878940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11496 contig Ccv1_Contig11496:5..422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878940 vs. ExPASy Swiss-Prot
Match: GSR2_ARATH (Uncharacterized protein At2g40430 OS=Arabidopsis thaliana GN=At2g40430 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.090e-29
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 3 
Query:   66 MGKIAKGSRKGKKAWGANISTEDIEDFFEQSNKDALSGGSLSQLPNDSLFYVDNSKDLSVKRKIEKHREKVLRCDSVLQKNPFVR 320
            MGK +K SRKGKKAW ANIS+EDIEDFFE++ +DALSGG+LS  P++ LF+VD S DL VKRKIEKHRE+VLR DS+L+KNPFV+
Sbjct:    1 MGKRSKTSRKGKKAWRANISSEDIEDFFEKTTRDALSGGNLSAAPSEDLFHVDKSHDLPVKRKIEKHRERVLRVDSILKKNPFVQ 85
The following BLAST results are available for this feature:
BLAST of FC878940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GSR2_ARATH2.090e-2971.76Uncharacterized protein At2g40430 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ2YA17RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ2YA17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878940 ID=FC878940; Name=FC878940; organism=Citrus clementina; type=EST; length=418bp
CGCAACAGCGGCAGCGGCAGCGGCAGCGGAGGCGCAGACACCACAAACAG
AGAAGCAAAGAAGAGATGGGGAAGATAGCAAAAGGGTCGAGGAAGGGAAA
GAAAGCGTGGGGAGCTAACATAAGCACAGAAGATATAGAAGATTTCTTTG
AGCAATCAAATAAAGACGCTCTCTCCGGTGGCTCTCTTTCTCAGCTTCCG
AACGACTCCCTTTTCTACGTCGACAACTCCAAAGATCTTTCGGTGAAGCG
GAAGATTGAGAAACATAGGGAAAAGGTACTCCGCTGTGACAGTGTGCTGC
AGAAGAATCCTTTTGTTCGGGCATTGCCATCGTCAAAGCCGAAGCAGAAG
AAGAAATCCAAGAAAGAGAATAAGGATGTTGTGAAAGAAAAGGATGAAAC
TCGGGATGGTCAGAAGAG
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