FC878942

Overview
NameFC878942
Unique NameFC878942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14580 contig Ccv1_Contig14580:131..1046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.789e-61
Identity = 132/237 (55.70%), Postives = 150/237 (63.29%), Query Frame = 1
Query:  271 GGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKISPSPXXXXXXXXXXXXXXRS-------------ISPANSGEEQVISANSSPVA--------VPXXXXXXXXXXXXMPXXXXXXXXXXXXXAQLNNELSQLKGLCNNILALMTNYASGQLDNVS-LREGKSVEVL 915
            GGDSQRS+PTPFLTKTYQLV+DP  D+LI+WN DG+TFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEF+NDCF+RGEK LLRDIQRRKIS  P               S             +SP+NSGEEQVIS+NSSP A        V              P              +L  E+++LKGL  NI  LM N+  GQ D    L EGK +++L
Sbjct:   49 GGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKIS-QPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSSPAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLL 284          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.361e-60
Identity = 124/222 (55.86%), Postives = 145/222 (65.32%), Query Frame = 1
Query:  238 PVEQTSESPATG-GDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKISP-------SPXXXXXXXXXXXXXXRSISPANSGEEQVISANSS---PVAVPXXXXXXXXXXXXMPXXXXXXXXXXXXXAQLNNELSQLKGLCNNILALMTNYASGQ 870
            P    +E+   G G  QR++PTPFLTKTYQLVDDP+VDD+I+WN DGSTF+VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRK+VPDRWEFANDCFRRGE+ LL +I RRK++P       +               R  SP  SGEEQVIS++SS   P+ +P                           AQL  ELSQ++ LCNNIL LM+ YAS Q
Sbjct:   26 PPAPAAEAAGVGVGQQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKYASTQ 247          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.987e-55
Identity = 126/250 (50.40%), Postives = 145/250 (58.00%), Query Frame = 1
Query:  220 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKI---------SPSP--------------XXXXXXXXXXXXXXRSISPANSGEEQVISAN----------SSPVAVPXXXXXXXXXXXXMPXXXXXXXXXXXXXAQLNNELSQLKGLCNNILALMTNYASGQ 870
            G +P      T+ + A  G  QRSLPTPFLTKTYQLV+DP+VDD+I+WN DGSTF+VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRK+VPDRWEFANDCFRRGEK LL DI RRK+          PSP                            R+ SPA+S EEQV+S+N          S   + P            M              A+L  EL  +K LCNNIL LM+ YA+ Q
Sbjct:   13 GGEPPPAAVMTAAAEALAG--QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVAAAAAAPPPPSPGMATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSGEEHRQASGSGSAPGGGGGGSASGGDM---GEENERLRRENARLTRELGHMKKLCNNILLLMSKYAATQ 257          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.387e-52
Identity = 109/212 (51.42%), Postives = 137/212 (64.62%), Query Frame = 1
Query:  280 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKISPSPXXXXXXXXXXXXXXRSISPANSGEE----QVISANSSPVAVPXXXXXXXXXXXXMPXXXXXXXXXXXXXAQLNNELSQLKGLCNNILALMTNYASGQLDNVSLREGKS 903
            SQRS+PTPFLTKT+ LV+D S+DD+I+WN DGS+FIVW P +FA+DLLPK+FKHNNFSSFVRQLNTYGF+KVVPDRWEF+ND F+RGEK LLR+IQRRKI+ +                 +SP+NSGE+    QV+S  SSP +                              QLN EL+Q+K +C+NI +LM+NY   Q  + S   G S
Sbjct:   16 SQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMS--SSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPGGS 225          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.177e-43
Identity = 94/202 (46.53%), Postives = 120/202 (59.41%), Query Frame = 1
Query:  280 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKISPSPXXXXXXXXXXXXXXRSISPANSGEEQVISANSSPVAVPXXXXXXXXXXXXMPXXXXXXXXXXXXXAQLNNELSQLKGLCNNILALMTNYASGQLDNVS 885
            SQR+ P PFL KTYQLVDD + DD+I+WN  G+TF+VW+ AEFA+DLLPKYFKHNNFSSFVRQLNTYGFRK+VPD+WEFAN+ F+RG+K LL  I+RRK   S                S SP NSG++   S+ SSP +                               L++EL Q K  CN ++A ++ Y     D ++
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTS----TPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMIN 199          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.591e-40
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  253 SESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDG-STFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRK------ISPSP 591
            S+  A    +Q+++P PFLTKTYQLVDDP+ D +++W  D  STF+VWRP EFARD+LP YFKHNNFSSFVRQLNTYGFRKVVP+RWEFAN+ FR+GEK LL +I RRK       SPSP
Sbjct:    8 SDCEAAAAAAQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSASTASPSP 127          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.078e-40
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 1
Query:  286 RSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKIS 582
            +++P PFLTKTYQLVDDP+ D +++W  D +TF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+VPDRWEFAN+ F+RGEK LL +I RRK S
Sbjct:   29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTS 127          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.714e-40
Identity = 72/99 (72.73%), Postives = 88/99 (88.89%), Query Frame = 1
Query:  280 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRK 576
            +QRS+P PFL+KTYQLVDD S DD+++WN +G+ F+VW+ AEFA+DLLP+YFKHNNFSSF+RQLNTYGFRK VPD+WEFAND FRRG + LL DI+RRK
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRK 105          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.347e-39
Identity = 77/106 (72.64%), Postives = 86/106 (81.13%), Query Frame = 1
Query:  259 SPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRK 576
            SPA G         PFLTKTY +V+DPS D+ I+WN  G+ F+VWRPAEFARDLLPK+FKH+NFSSFVRQLNTYGF+KVV DRWEFANDCFRRGEK LL  IQRRK
Sbjct:    3 SPAAG-------TPPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRK 101          
BLAST of FC878942 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  220 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKIS 582
            G + +  +E++     T   +  + P PFL+KTYQLVDDPS DD+++W  D +TF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+V DRWEFAN+ FR+G K LL +I RRK S
Sbjct:    9 GGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSS 129          
The following BLAST results are available for this feature:
BLAST of FC878942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFB2B_ARATH2.789e-6155.70Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2B_ORYSJ2.361e-6055.86Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ2.987e-5550.40Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH1.387e-5251.42Heat stress transcription factor B-2a OS=Arabidops... [more]
HSF24_SOLPE1.177e-4346.53Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB4C_ORYSJ1.591e-4065.83Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB4_ARATH2.078e-4073.74Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HSFB1_ARATH2.714e-4072.73Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2A_ORYSJ1.347e-3972.64Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4D_ORYSJ1.759e-3961.98Heat stress transcription factor B-4d OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878942 ID=FC878942; Name=FC878942; organism=Citrus clementina; type=EST; length=916bp
TCATCCATCATTTCTGAACCTCCTGGTTTTCAACTTTCAACGGCGTCTGA
TCGAGTTCCAACTTTCAACGCTGCACGTTGAACAGTGGTTTATTCTTCGC
TTGTTAGGTTTGGTGAGAAAATAATCAAAATTCCTCTTCATTACCCAACG
TACAGATTGAGCGTTAGCAATTAGCAGAAGCGAAGAGAGAGTTGCAGGAT
TGATAGGGTTGGGATCTGAGGTATTGACCCGATGGCTCCGGTTGAGCAGA
CGAGCGAATCTCCTGCAACAGGAGGAGACTCGCAGAGATCTCTTCCGACG
CCGTTTTTGACCAAAACTTACCAACTGGTTGACGATCCTTCGGTCGATGA
TTTAATCGCGTGGAACAGCGACGGATCGACCTTCATAGTCTGGAGACCAG
CGGAATTCGCCAGAGATTTGTTGCCGAAATATTTTAAACACAACAATTTC
TCTAGCTTCGTCCGCCAGCTCAACACTTACGGATTTAGGAAAGTAGTTCC
GGATCGTTGGGAATTTGCAAACGATTGTTTCCGAAGAGGTGAGAAAGGTC
TTTTACGAGACATTCAGCGTCGTAAAATATCACCATCTCCTGCAGCTGGC
ACGGCGGGGACTGTGACGGTCGCTGCGGTTGCACGGTCGATTTCGCCGGC
GAACTCCGGCGAGGAACAGGTGATATCAGCTAATTCGTCGCCGGTGGCGG
TGCCGACTACGACCGTGATTAGAACTACGAGTTGTACGACGATGCCCGAG
CTTCTAGAAGAGAACGAAAAGTTGAGAAAAGAAAACGCTCAACTGAATAA
CGAGTTGAGTCAGTTGAAAGGATTGTGTAATAACATACTCGCTTTAATGA
CGAATTACGCGTCCGGTCAGCTGGACAACGTAAGTCTGCGGGAGGGGAAG
TCGGTGGAGGTACTGC
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