FC878944

Overview
NameFC878944
Unique NameFC878944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7719 contig Ccv1_Contig7719:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878944 vs. ExPASy Swiss-Prot
Match: YOR31_YEAST (Putative uncharacterized hydrolase YOR131C OS=Saccharomyces cerevisiae GN=YOR131C PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.122e-22
Identity = 72/212 (33.96%), Postives = 110/212 (51.89%), Query Frame = 3 
Query:  144 LRGVVFDMDGTLTVPVI-DFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQR-HAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNQFGIT----FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 761
            ++ VVFDMDGTL +P    FPAM  A+  ED+           IDILH I++   + ++  A+  I   E + +  +Q  PG   +  +L    I + + TRN+   V+ F  +F  +    F   ++REFRP KP P PLLHI S   ++P E++MVGDS  DD+  G+ AG FT LL      +     +     D  V  L+E++ +++
Sbjct:   13 IKAVVFDMDGTLCLPQPWMFPAMRNAIGLEDK----------SIDILHFIDTLPTEKEKKEAHDRIELVEAKAMKEMQPQPGLVDIMRYLTKNGISKNICTRNVGAPVETFVKRFIPSELSRFDYIVTREFRPTKPQPDPLLHIASKLNIRPLEMIMVGDSF-DDMKSGRSAGCFTVLL--KNHVNGHLLLEHKELVDVSVEDLSEIIELIQ 211
The following BLAST results are available for this feature:
BLAST of FC878944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YOR31_YEAST4.122e-2233.96Putative uncharacterized hydrolase YOR131C OS=Sacc... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA87BA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878944 ID=FC878944; Name=FC878944; organism=Citrus clementina; type=EST; length=888bp
CAAAATATCAAAATCATCACAAATTCATGCCTTTATTTCTCTCAAAATCA
TTCCTCTTCCTCCCCACAAGACCCTTTTCCTCAATCTCCAACTTCACTTC
GTACATGATGTCATCATTTTCACCTCCCAAACCCAAGACGCGCCTTCGGG
GTGTCGTTTTCGACATGGACGGAACCCTAACGGTCCCCGTCATCGACTTC
CCCGCAATGTACCGGGCCGTGCTTGGAGAAGACGAGTACAAGCGCGTTAA
AGCTGAGAATCCGACTGGGATTGATATTCTTCACCATATTGAGAGCTGGA
GCCCCGATTTGCAGCGCCATGCGTATCAAACTATCGCCGACTTTGAACGC
CAGGGCCTTGATCGCCTTCAAATTATGCCTGGTACAGCGCAACTTTGTGG
GTTTCTTGATTCAAAGAAAATAAGAAGAGGATTAATAACTCGCAATATTA
AGGAAGCAGTTGATCTTTTTCATAACCAATTTGGGATAACATTTTCTCCA
GCACTAAGCAGGGAGTTTCGTCCTTATAAACCAGACCCTGGTCCACTACT
TCATATCTGTTCAACGTGGGAAGTTCAACCCAATGAAGTCATGATGGTTG
GTGATAGCCTTAAAGATGATGTAGCTTGCGGAAAACGAGCAGGAGCATTC
ACATGCTTGCTTGATGAAACAGGGAGGTATAGCGCTGATGATTTCACAAA
GTCAAATCTACAACCGGATTTCCGGGTGTCTTCACTGACTGAGGTTCTGT
CAATATTGGAAGCAAACTTTGACCTGATTCCATGATTTTGAAAACTCATT
GTTGGTGAATGATGGGCCCTTTAGTGGACAATCATGACAGATTGTGCTTT
ATCCAGGGGAGACTCAGACTAAGCTCCCTTGAAAAATT
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