FC878946
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 8.737e-37 Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +A+VVGWPPVR++RKNA+ + KFVKVAV+GAPYLRKVDLE Y Y +LL AL+D FS TI KF +ERK++D VNG EYVPTYEDKDGDWMLVGDVPWK Sbjct: 74 KARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD--------------------------------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173 HSP 2 Score: 36.965 bits (84), Expect = 8.737e-37 Identity = 15/22 (68.18%), Postives = 21/22 (95.45%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 ++MFVE+C+R+RLMKSSEA+ L Sbjct: 172 WKMFVETCQRLRLMKSSEAVNL 193
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 7.811e-35 Identity = 73/141 (51.77%), Postives = 85/141 (60.28%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +A+VVGWPPVRA+RKNA+ KFVKVAV+GAPYLRKVDLE Y Y +LL+AL+D FS TI K +GN E K++D V+G EYVPTYEDKDGDWMLVGDVPWK Sbjct: 79 KARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRK------------------------------LGNE--EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWK 187 HSP 2 Score: 36.965 bits (84), Expect = 7.811e-35 Identity = 15/22 (68.18%), Postives = 21/22 (95.45%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 ++MFVE+C+R+RLMKSSEA+ L Sbjct: 186 WKMFVETCQRLRLMKSSEAVNL 207
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 1.314e-34 Identity = 68/141 (48.23%), Postives = 84/141 (59.57%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMKGSCK---------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 775 +AQVVGWPPVR+YRKN M K FVKV+++GAPYLRK+DL +Y SY EL +AL +MFS T+ K + F +NERK++D VN +YVP+YEDKDGDWMLVGDVPW Sbjct: 80 KAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDF------------------------MNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196 HSP 2 Score: 35.8094 bits (81), Expect = 1.314e-34 Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3 Query: 891 MFVESCKRVRLMKSSEAIGL 950 MFV++CKR+RLMK S+AIGL Sbjct: 198 MFVDTCKRLRLMKGSDAIGL 217 HSP 3 Score: 26.1794 bits (56), Expect = 1.314e-34 Identity = 19/46 (41.30%), Postives = 22/46 (47.83%), Query Frame = 1 Query: 157 GTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATK*EIKIKS 294 G KRGF ETVDL L N + E + STT + K KS Sbjct: 29 GNKRGFSETVDLKL------NLNNEPANKEGSTTHDVVTFDSKEKS 68
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.414e-33 Identity = 72/154 (46.75%), Postives = 85/154 (55.19%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +AQVVGWPPVR+YRKN + KG + FVKV+++GAPYLRKVDL++Y SY EL ALE MFS TI + N +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+ Sbjct: 118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV--------------------------NGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWE 245 HSP 2 Score: 39.2762 bits (90), Expect = 2.414e-33 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 + MFVESCKR+R+MK SEAIGL Sbjct: 244 WEMFVESCKRLRIMKGSEAIGL 265
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.538e-32 Identity = 67/162 (41.36%), Postives = 88/162 (54.32%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMKG-----------------------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +AQVVGWPPVR++RKN M G + +VKV+++GAPYLRK+DL++Y +YQ+L +AL MFS TI NY + + +NE K+ID +NG +YVPTYEDKDGDWMLVGDVPW+ Sbjct: 68 KAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG-------------------------NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204 HSP 2 Score: 38.891 bits (89), Expect = 1.538e-32 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 + MFV+SCKR+R+MK SEAIGL Sbjct: 203 WEMFVDSCKRIRIMKGSEAIGL 224
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 5.768e-32 Identity = 65/147 (44.22%), Postives = 82/147 (55.78%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMK---------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 775 +AQVVGWPPVR YRKN M G+ FVKV+++GAPYLRKVDL++Y SY++L AL MFS T+ + + +NE K++D +N EYVP+YEDKDGDWMLVGDVPW Sbjct: 74 KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI-------------------------DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195 HSP 2 Score: 38.5058 bits (88), Expect = 5.768e-32 Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3 Query: 891 MFVESCKRVRLMKSSEAIGL 950 MFVESCKR+R+MK SEAIGL Sbjct: 197 MFVESCKRLRIMKGSEAIGL 216
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.086e-31 Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +AQVVGWPPVR++RKN + CK VKV+++GAPYLRK+D+ +Y SY EL A ++MF+ TI K G+H ++ + +EYVPTYEDKDGDWMLVGDVPW+ Sbjct: 98 KAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGK------------------------------CGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWE 203 HSP 2 Score: 39.2762 bits (90), Expect = 8.086e-31 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 + MFVESCKR+R+MK SEAIGL Sbjct: 202 WEMFVESCKRLRIMKGSEAIGL 223
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.048e-30 Identity = 68/163 (41.72%), Postives = 85/163 (52.15%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMKGS-----------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNH-------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +AQVVGWPP+R++RKN+M S C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS TI +F G+H +NE ++ D + G EYV TYEDKD DWMLVGDVPW+ Sbjct: 141 KAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF------------------------------GSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273 HSP 2 Score: 35.8094 bits (81), Expect = 1.048e-30 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 + MF+ SCK++R+MKSSEAIGL Sbjct: 272 WEMFICSCKKLRIMKSSEAIGL 293
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.377e-30 Identity = 63/136 (46.32%), Postives = 74/136 (54.41%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 +A+ VGWPPVRAYR+NA++ K VKVAV+GAPYLRKVDL + Y LL AL MF+ + G K++D V G EYVPTYEDKDGDWMLVGDVPWK Sbjct: 59 KARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGG----------------------------GGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWK 166 HSP 2 Score: 40.4318 bits (93), Expect = 1.377e-30 Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGL 950 ++MFVESCKR+RLMKSSEA+ L Sbjct: 165 WKMFVESCKRIRLMKSSEAVNL 186
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.025e-30 Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 2 Query: 380 RAQVVGWPPVRAYRKNAM--------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778 + QVVGWPPVR++RKN + + FVKV+++GAPYLRKVDL++Y SY+EL +L MFS T N + + +NE K+ D +N +YVPTYEDKDGDWMLVGDVPW+ Sbjct: 88 KTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFG-------------------------NCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209 HSP 2 Score: 40.0466 bits (92), Expect = 3.025e-30 Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 3 Query: 885 YRMFVESCKRVRLMKSSEAIGLG 953 + MFVESCKR+R+MK EAIGLG Sbjct: 208 WEMFVESCKRLRIMKGKEAIGLG 230 The following BLAST results are available for this feature:
BLAST of FC878946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878946 ID=FC878946; Name=FC878946; organism=Citrus clementina; type=EST; length=959bpback to top |