FC878946

Overview
NameFC878946
Unique NameFC878946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length959
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878946_ssr826 microsatellite FC878946_ssr826:826..843. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878946_ssr123 microsatellite FC878946_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878946_ssr632 microsatellite FC878946_ssr632:632..643. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11862 contig Ccv1_Contig11862:11..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.737e-37
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +A+VVGWPPVR++RKNA+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  TI KF                                  +ERK++D VNG EYVPTYEDKDGDWMLVGDVPWK
Sbjct:   74 KARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD--------------------------------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWK 173          

HSP 2 Score: 36.965 bits (84), Expect = 8.737e-37
Identity = 15/22 (68.18%), Postives = 21/22 (95.45%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            ++MFVE+C+R+RLMKSSEA+ L
Sbjct:  172 WKMFVETCQRLRLMKSSEAVNL 193          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.811e-35
Identity = 73/141 (51.77%), Postives = 85/141 (60.28%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +A+VVGWPPVRA+RKNA+           KFVKVAV+GAPYLRKVDLE Y  Y +LL+AL+D  FS  TI K                              +GN   E K++D V+G EYVPTYEDKDGDWMLVGDVPWK
Sbjct:   79 KARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRK------------------------------LGNE--EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWK 187          

HSP 2 Score: 36.965 bits (84), Expect = 7.811e-35
Identity = 15/22 (68.18%), Postives = 21/22 (95.45%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            ++MFVE+C+R+RLMKSSEA+ L
Sbjct:  186 WKMFVETCQRLRLMKSSEAVNL 207          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.314e-34
Identity = 68/141 (48.23%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMKGSCK---------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 775
            +AQVVGWPPVR+YRKN M    K         FVKV+++GAPYLRK+DL +Y SY EL +AL +MFS  T+ K       + F                        +NERK++D VN  +YVP+YEDKDGDWMLVGDVPW
Sbjct:   80 KAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDF------------------------MNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196          

HSP 2 Score: 35.8094 bits (81), Expect = 1.314e-34
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:  891 MFVESCKRVRLMKSSEAIGL 950
            MFV++CKR+RLMK S+AIGL
Sbjct:  198 MFVDTCKRLRLMKGSDAIGL 217          

HSP 3 Score: 26.1794 bits (56), Expect = 1.314e-34
Identity = 19/46 (41.30%), Postives = 22/46 (47.83%), Query Frame = 1
Query:  157 GTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATK*EIKIKS 294
            G KRGF ETVDL L      N + E  +   STT      + K KS
Sbjct:   29 GNKRGFSETVDLKL------NLNNEPANKEGSTTHDVVTFDSKEKS 68          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.414e-33
Identity = 72/154 (46.75%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +AQVVGWPPVR+YRKN +     KG                +  FVKV+++GAPYLRKVDL++Y SY EL  ALE MFS  TI     +                            N +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+
Sbjct:  118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV--------------------------NGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWE 245          

HSP 2 Score: 39.2762 bits (90), Expect = 2.414e-33
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            + MFVESCKR+R+MK SEAIGL
Sbjct:  244 WEMFVESCKRLRIMKGSEAIGL 265          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.538e-32
Identity = 67/162 (41.36%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMKG-----------------------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +AQVVGWPPVR++RKN M G                             +  +VKV+++GAPYLRK+DL++Y +YQ+L +AL  MFS  TI                          NY    + + +NE K+ID +NG +YVPTYEDKDGDWMLVGDVPW+
Sbjct:   68 KAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG-------------------------NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204          

HSP 2 Score: 38.891 bits (89), Expect = 1.538e-32
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            + MFV+SCKR+R+MK SEAIGL
Sbjct:  203 WEMFVDSCKRIRIMKGSEAIGL 224          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.768e-32
Identity = 65/147 (44.22%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMK---------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 775
            +AQVVGWPPVR YRKN M                G+  FVKV+++GAPYLRKVDL++Y SY++L  AL  MFS  T+  +                               + +NE K++D +N  EYVP+YEDKDGDWMLVGDVPW
Sbjct:   74 KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI-------------------------DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195          

HSP 2 Score: 38.5058 bits (88), Expect = 5.768e-32
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:  891 MFVESCKRVRLMKSSEAIGL 950
            MFVESCKR+R+MK SEAIGL
Sbjct:  197 MFVESCKRLRIMKGSEAIGL 216          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.086e-31
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMKGSCK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +AQVVGWPPVR++RKN +   CK    VKV+++GAPYLRK+D+ +Y SY EL  A ++MF+  TI K                               G+H   ++     + +EYVPTYEDKDGDWMLVGDVPW+
Sbjct:   98 KAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGK------------------------------CGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWE 203          

HSP 2 Score: 39.2762 bits (90), Expect = 8.086e-31
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            + MFVESCKR+R+MK SEAIGL
Sbjct:  202 WEMFVESCKRLRIMKGSEAIGL 223          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.048e-30
Identity = 68/163 (41.72%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMKGS-----------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNH-------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +AQVVGWPP+R++RKN+M  S                       C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS  TI +F                              G+H       +NE ++ D + G EYV TYEDKD DWMLVGDVPW+
Sbjct:  141 KAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF------------------------------GSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273          

HSP 2 Score: 35.8094 bits (81), Expect = 1.048e-30
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            + MF+ SCK++R+MKSSEAIGL
Sbjct:  272 WEMFICSCKKLRIMKSSEAIGL 293          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.377e-30
Identity = 63/136 (46.32%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            +A+ VGWPPVRAYR+NA++      K VKVAV+GAPYLRKVDL  +  Y  LL AL  MF+     +                               G      K++D V G EYVPTYEDKDGDWMLVGDVPWK
Sbjct:   59 KARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGG----------------------------GGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWK 166          

HSP 2 Score: 40.4318 bits (93), Expect = 1.377e-30
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGL 950
            ++MFVESCKR+RLMKSSEA+ L
Sbjct:  165 WKMFVESCKRIRLMKSSEAVNL 186          
BLAST of FC878946 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.025e-30
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  380 RAQVVGWPPVRAYRKNAM--------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTISKFCKYFFFLIF*TKKNYVVNLIYLFNYLFLVIGNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 778
            + QVVGWPPVR++RKN +                +  FVKV+++GAPYLRKVDL++Y SY+EL  +L  MFS  T                           N     + + +NE K+ D +N  +YVPTYEDKDGDWMLVGDVPW+
Sbjct:   88 KTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFG-------------------------NCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209          

HSP 2 Score: 40.0466 bits (92), Expect = 3.025e-30
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  885 YRMFVESCKRVRLMKSSEAIGLG 953
            + MFVESCKR+R+MK  EAIGLG
Sbjct:  208 WEMFVESCKRLRIMKGKEAIGLG 230          
The following BLAST results are available for this feature:
BLAST of FC878946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
IAA1_ORYSJ8.737e-3754.48Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ7.811e-3551.77Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA17_ARATH1.314e-3448.23Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA30_ORYSJ2.414e-3346.75Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA16_ARATH1.538e-3241.36Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA14_ARATH5.768e-3244.22Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA11_ORYSJ8.086e-3144.12Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA27_ARATH1.048e-3041.72Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA23_ORYSJ1.377e-3046.32Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
AUX28_SOYBN3.025e-3042.18Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA41AA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41AA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878946 ID=FC878946; Name=FC878946; organism=Citrus clementina; type=EST; length=959bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGACACCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GAGCTCAAGCAACGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGTAAGAAATTAAAATAAAATCTTTATTT
TTTATGCATGTTAGGTCCTGATGTGAGCGGGATTCGCACCCAGATGATTT
TATATCGGCCTAAAATTGTATGTTTTGATAGGGCACAAGTGGTGGGGTGG
CCGCCGGTGAGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATT
TGTAAAGGTGGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTG
AGATATACCATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTC
TCATTCTTGACTATAAGTAAGTTTTGTAAATACTTTTTTTTTTTAATTTT
TTAAACAAAGAAAAATTATGTTGTGAACTTAATTTATTTATTTAATTATT
TATTTTTGGTTATAGGGAACCACGTAAATGAGAGAAAGATTATAGATAAT
GTAAATGGAGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTG
GATGTTAGTTGGAGATGTGCCATGGAAGTAAGTTTAATTTGAGATTATCC
TTTAAAGATTCAANTTCATCGCTTCATATATATATATATATATTGATAAA
CTCATATATTAATCTGTTGGTAATCTTTCGCTTTTACAGAATGTTTGTTG
AATCTTGCAAGCGAGTAAGGTTGATGAAAAGCTCAGAAGCAATTGGGTTA
GGTAATTAA
back to top