FC878947

Overview
NameFC878947
Unique NameFC878947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5568 contig Ccv1_Contig5568:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.689e-37
Identity = 89/259 (34.36%), Postives = 139/259 (53.67%), Query Frame = 1
Query:  100 EYAEYQRDNFWKSNEGEVPPFNTDPGKLEERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDD--ELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVANSNYAFYH--GIGADLGLSDPVFQKRL-AADGIDPTTMPNEAGAKWIDNVWHGRAHSWEKMPWVRDTW 861
            E   Y+ + + K  + + P    D    E+ A +R+++    Y    AG   T+  N ++F +  IIP  L+ +   D +TT+FG K   PI  AP+G+ KI+NP GE      A   ++PY +STA +   ED+  A+G   R++QLY P +D  ++T+SLL RA + G    I+TLDT+ LGWR  D+ N    F +   IG + G SDPVF+K+     G++      EA  ++   V+ G +H WE + ++R  W
Sbjct:   12 EPISYESEIYAKGLKFQRPQITVDGRHWEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGISHDWEDLKFLRKHW 270          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 8.098e-34
Identity = 82/260 (31.54%), Postives = 132/260 (50.77%), Query Frame = 1
Query:  103 YAEYQRDNFWKSNEGEVPPFNTDPGKLEERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKI--YNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVANSNYAFYHGIGADLGLSDPVFQKRLAA-DGIDPTTMPNEAGAKWIDNVWH---GRAHSWEKMPWVRDTWK 864
            + +Y+ + + +   G  P         E  A+Q L  G   Y +  +G   T  AN +AF    ++PRML+   +RD +  ++G   +AP+ FAPIG+  +   +  G+   A+ +    +PY  ST     +ED+    G+ P +FQLY P D +L  S + RA EAG+   ++TLDTW  GWR  D+  SN+ F  G+     ++DPVFQK+  A  G++   + +    +   + WH   G + +WE + WVR   K
Sbjct:    4 WGDYENEIYGQGLVGVAPTLPMSYADWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDLTISNFPFLRGLCLTNYVTDPVFQKKFKAHSGVEAEGLRD--NPRLAADFWHGLFGHSVTWEDIDWVRSITK 261          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.770e-23
Identity = 74/221 (33.48%), Postives = 114/221 (51.58%), Query Frame = 1
Query:  178 KLEERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVANSNYAFYHGIGADLGLSDPVFQKRLAA--DG---------IDPTTMPNEAGAKWIDNV 807
            +L E AK+ L +  + Y +S +    T   N  AF R +++PR LVD +K +T T IFG  +S PI  AP  + ++ +  GEL   + +KE N    LS+  +  +ED+ +A    P +FQLY   D +++  L+ RA   G+SA +LT+DT  LG R  D  NS            GLS  +F+K + +  DG         IDP+   N+   KW+ ++
Sbjct:   36 ELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNS-------FKLPNGLSLKIFEKLMLSNLDGGLNQYIATMIDPSLTWND--LKWLKSI 247          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.097e-22
Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  193 AKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN 669
            A+++LS+  W +    A    T+  N  AF R R+ PR L D +K DT TTI G ++SAPI  +P   + I  P GE   A+ A+E N+ Y +S+  S  +ED+ AA  E  R+FQLY   D +    ++ RA   GF A ++T+DT  LG R  D  N
Sbjct:   13 AQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 171          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.871e-22
Identity = 66/168 (39.29%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  166 TDPGKLEERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN 669
            T+  + E  AKQ+L +  + Y +S A    T   NR AF R    PR+L+D    D TTTI G K+S PI  AP  + K+ +P GE   A+ A        LS+  +  +E+V A+ G   RFFQLY   D  +   L+ RA  AGF A  LT+DT +LG R  D+ N
Sbjct:    4 TNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEV-ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.871e-22
Identity = 71/190 (37.37%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  193 AKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN-----SNYAFYHGIGADLGLSDPVFQKRLAA 747
            AKQ+L +  + Y +S A    T   NR AF R    PR+L+D +K D TTT+ G K+S PI  AP  + K+ +P GE   A+ A        LS+  +  +E+V A+ G   RFFQLY   +  +   L+ RA  AGF A  LT+DT +LG R  D+ N      N    +  G DLG  D      LA+
Sbjct:   13 AKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEV-ASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.110e-22
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  193 AKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN-----SNYAFYHGIGADLGLSDPVFQKRLAA 747
            AK +L +  + Y +S A    T   NR AF R    PR+L+D NK D  TT+ G K+S PI  AP    K+ +P GE   A+ A        LS+  +  +E+V A+ G   RFFQLY   + ++   L+ RA +AGF A  LT+DT +LG R  D+ N      N    +  G DLG  D      LA+
Sbjct:   13 AKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEV-ASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  187 ERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN 669
            E A++ LS+  W +    A    T   N  AF + R+ PR L D +K D  TTI G ++SAPI  AP G +++  P GE+  A+ A+  ++ Y  ST  S  +ED+ AA     R+FQLY   + ++   ++ +    GF A ++T+D  ++G R +D+ N
Sbjct:   11 EHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITN 171          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.287e-20
Identity = 61/162 (37.65%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  184 EERAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWRHDDVAN 669
            +  A+++LS+    +    A  S T   N  AF R R+ PR L D ++ DT TTI G ++SAPI  AP G + +  P GE+  A+ A+   + Y  ST  S  +ED+  A  E  R+FQLY   D +L   L+ R    GF A ++TLDT   G R  D+ N
Sbjct:   10 QAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRN 171          
BLAST of FC878947 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  190 RAKQRLSEGGWYYASSNAGMSTTHLANRQAFYRHRIIPRMLVDTNKRDTTTTIFGHKVSAPIGFAPIGINKIYNPAGELPVAKVAKELNLPYCLSTAGSQPIEDVGAANGEAPRFFQLYQPHDDELTVSLLTRAHEAGFSACILTLDTWQLGWR 651
            +A+++LS+  W +    A    T+  N  AF R R+ PR L D +K DT TTI G +++API  +P   + I    GE   AK A++ N+ Y +S+  S  +ED+ AA      +FQLY   D ++   ++ R    GF A ++T+D   LG R
Sbjct:   12 QAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNR 165          
The following BLAST results are available for this feature:
BLAST of FC878947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
YKN3_SCHPO2.689e-3734.36Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LA2M_MYCSM8.098e-3431.54Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
HAOX_DICDI3.770e-2333.48Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_RAT1.097e-2238.99Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
GOX_SPIOL1.871e-2239.29Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH1.871e-2237.37Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH7.110e-2236.84Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX2_BOVIN7.861e-2134.16Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN2.287e-2037.65Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_MOUSE6.229e-1835.06Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878947 ID=FC878947; Name=FC878947; organism=Citrus clementina; type=EST; length=892bp
ATTGATTGATAAACCACTATCAGATAGAAGTACACGCGTGAGATCTTGAA
CGCCAAAATGGACGCCAACAACCCCAACAAAGACCGCAGGACAACGCCCG
AGTATGCAGAATACCAGCGCGACAACTTCTGGAAAAGCAACGAGGGCGAA
GTCCCACCATTCAACACCGACCCAGGCAAACTCGAAGAGCGCGCCAAACA
ACGCCTCTCAGAGGGCGGCTGGTACTATGCCTCCTCCAACGCCGGCATGT
CCACCACCCACCTCGCCAACCGTCAAGCCTTCTACCGCCACCGCATAATC
CCGCGCATGCTCGTCGACACCAACAAACGCGACACAACTACCACCATCTT
CGGCCACAAAGTCTCCGCGCCCATCGGCTTTGCGCCCATAGGTATCAACA
AAATCTACAACCCCGCCGGCGAACTCCCCGTGGCGAAAGTCGCCAAAGAA
CTCAACCTCCCCTACTGCCTCTCCACCGCTGGAAGTCAGCCGATCGAAGA
CGTCGGCGCCGCGAACGGCGAGGCTCCGCGATTCTTTCAGCTTTACCAAC
CGCATGATGACGAGTTGACGGTCTCGCTGCTCACGCGTGCTCACGAGGCA
GGGTTCTCAGCTTGCATCCTCACCCTCGACACATGGCAACTCGGCTGGCG
GCACGACGACGTCGCAAACTCCAACTACGCCTTCTACCACGGCATCGGTG
CCGATCTCGGCCTCTCGGATCCCGTTTTCCAAAAACGCCTCGCAGCCGAT
GGAATCGATCCCACAACCATGCCGAACGAAGCGGGAGCGAAATGGATCGA
CAACGTCTGGCACGGGCGCGCGCACTCTTGGGAGAAAATGCCATGGGTGC
GGGATACGTGGAAGCGGATTTCGGGGGGTAAGCCGTTTGTGC
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