FC878951

Overview
NameFC878951
Unique NameFC878951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL34_ARATH (Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.214e-16
Identity = 75/256 (29.30%), Postives = 120/256 (46.88%), Query Frame = 3
Query:  135 VEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYL-SRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE--IYKPNMPD--FSICPVLEDLSI----DYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYS 875
            +E+++RTS+LSSRW+ +W  +P L  N       D  +D      FE+ +D+ L  N   +  F L+ +    YL  R   W+A  + R +  ++V      P+   + P      I  S+TL  LKL  +    +P   +  P +K  H+E   Y P + +   S CPVLEDL+I    +  LNF     + + SQTLK   L      + +N+    I+AP L+++   D      +V  L SL    LD +++
Sbjct:   23 IEESIRTSVLSSRWRKLWLKVPGLDVN-----VHDFPADGNL---FESLMDKFLEVNRGRLQNFKLNYESNLYYLMDRFVPWIATVVDRGIQHLDVTATDCPPWTIDFMPAN----ICKSKTLVSLKL-VNVGLDTPKFVVSLPCLKIMHLEDIFYSPLIAENLISGCPVLEDLTIVRNHEDFLNF-----LRVMSQTLKNFRLTFDWG-MGSNDFSVEIDAPGLKYMSFRDSQSDRIVVKNLSSLVKIDLDTEFN 259          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL64_ARATH (F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 71/254 (27.95%), Postives = 118/254 (46.46%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKL--ETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDF------SICPVLEDLSIDYSLNFDWD--ADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI 866
            ++A  TS+LS +W+ ++A + NL F+D         SD      F  FVDR+L L  + S++KFSL C      L+R+  W+   + R V E+++++ ++ P         LP  I+ S+TL  LKL    D         +  P++K  +++        F      S CPVLE+L +   +N  W+     S+S +TLKRL         + N    + + P L +L  +D     Y     +SL +A + +
Sbjct:   27 KEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSI-LEYP---------LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVL---MNIGWENWKFCSVSVKTLKRLTFFC--EETYENPKSVSFDTPNLVYLEYSDAIASKYPKVNFNSLVEAHIGL 265          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL33_ARATH (Putative F-box/FBD/LRR-repeat protein At5g25850 OS=Arabidopsis thaliana GN=At5g25850 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 80/251 (31.87%), Postives = 120/251 (47.81%), Query Frame = 3
Query:  135 VEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVS-ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE-IYKPNMPDF----SICPVLEDLSIDYSLNFDWDADI-SISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDI 866
            +++ V TS+LS+RWK +W S+P+L    +L Y     S       F +F DR   S  VS I    L+  +       L  W+   + RN+  + V     + F E      LP  +Y  ETL  LKL        P   +  P +K  H+  ++ PN   F    S CPVLEDL ID   N   D  +  + S++LKRL L+    +VF +     I+AP + +L +ND    +Y++ +L S  +A+LDI
Sbjct:   39 IKEVVTTSVLSTRWKNIWLSVPSL----ELIY-----SIFPNFNTFRSFGDRFFDSTRVSCIHNLKLYFDEHDACY--LTSWINAFVTRNIRRLYVRRVRGNYFHE------LPLSLYVCETLVSLKL-FHLTLVDPEF-VSLPCLKIMHLNYVWFPNDATFERLVSSCPVLEDLKIDVLWN---DGRVYRVKSRSLKRLRLLRSSTMVFDSVPGVVIDAPLICYLRINDRVSETYILNDLES--NAKLDI 265          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL3_ARATH (F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 72/262 (27.48%), Postives = 124/262 (47.33%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLS-NSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPD-----FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRAD 905
            +++V TS+LS RW+ +W  +P L  +       +   D+     F +FV+R L S N   + +F L  +      SR K W+   I R V    V+  VDD  E     V++P  +Y+ E L  L+L    V       +  P VK  H+++ K +         S CPVLE+L+I    N   +  + + SQ+LK  +  I      +  H  TI+AP+LE++++ D    S++++ +       +D+ ++   +DP+  D
Sbjct:   35 KESVCTSVLSKRWRNLWLHVPVLDLDS------NNFPDDDV---FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNEVDDDDEL----VKMPLSLYSCERLVNLQLYR--VALDHPESVSLPCVKIMHLDMVKYDADSTLEILISGCPVLEELTIVRDPNDSLEV-VCVRSQSLK--SFKIDSERYESQNHVVTIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPD 278          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL31_ARATH (F-box/FBD/LRR-repeat protein At5g22660 OS=Arabidopsis thaliana GN=At5g22660 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 77/260 (29.62%), Postives = 124/260 (47.69%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVS-ISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLET----DFVFKSPSSGICFPRVKKFHVE----IYKPNMPDF-SICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEH----QATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYS 875
            E+AV TSILS+RWK +W S P L  +       D   D    T F +F  R L S   S + K  +  Q +   +  +  W+  A+ R +  +EV+  +D   +       LP  +Y SE+L  L+L       FVF      +  P +K  H+E     Y   M  F S CPVLEDL++  +++   +  + +SSQ+L  L L+I     + N+     +  I+AP+L +L + D   VS+++  L S   A + + ++
Sbjct:   33 ENAVTTSILSTRWKDLWLSTPVLDID------IDAFDD---ATTFISFATRFLDSFKDSCLHKLQISFQMEAVDMWTIIPWIEDAVKRRIQHLEVDSRIDHMID------TLPLTVYLSESLVSLRLHLVMLHRFVF------VSLPNLKVMHLEENIYSYAETMEKFISSCPVLEDLTVVRNVDEATEKVLRVSSQSLNSLKLVIDSSKCWYNDDSDDWKVVIDAPQLVYLSLKDDQSVSFVINNLCSSAKADIKVSFN 271          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBD10_ARATH (Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 63/236 (26.69%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  126 SRKVEDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSI---SKFSLH--CQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHV-----EIYKPNMPDFSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVND 803
            S   +D V T +LS RWK +W  +P L F+D+         +     RF  +VD+ ++ N   +    KF++   C  +      +  W+ + ++RN+ E+E++   +  F E +  ++LP  +Y  E LE+LKL +  V   P   +CFP +K  H+     +  K +    S CPVLE+L +D S N        +   TL+ L+++     ++  +    + AP L++ +  D
Sbjct:   18 SLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEF------ELEPSYYGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSED-----IATWIRIGMVRNMRELEIS-HCEGYFRE-HRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRLLSGCPVLEELVLDKSYNSFHVRSFYVEIPTLQSLSILDTSGELY-GDFTFVVNAPALKYFNFVD 238          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL27_ARATH (F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 65/250 (26.00%), Postives = 117/250 (46.80%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLLSNSVSISKFSLHCQKKPRYLS-RLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIY----KPNMPDFSI-CPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYE-LHSLCDARLDI 866
            +D V TS+LS RW+ +W  +  L ++D            G    F  FV R LLSN+  + K  LH    P   +  +  W+  A+ R + ++++N+              LP  +Y S+TLE L+L  +FV     S +C P +K  H++        ++P     CP LE+L ++   + D + D++    +L+RL+++      +    +  I+ P L++L++ D  +      E +  L +A +DI
Sbjct:   22 KDVVATSLLSKRWQSLWMLVSELEYDDSY--------HTGDYKSFSQFVYRSLLSNNAPVIKH-LHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSS----NDASFSLPSSLYTSDTLETLRL-INFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLLFGCPNLEELFVERH-DQDLEMDVTFVVPSLRRLSMIDKN---YGQCDRYVIDVPSLKYLNITDDAVYDVRQIENMPELVEAHVDI 253          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FDL38_ARATH (F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 66/258 (25.58%), Postives = 116/258 (44.96%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRMLL--------SNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYK----PNMPD-FSICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDY 872
            +D + TS+LS RW+ +W  +P L ++ +L         +    RF  FVDR LL        S ++ I       +K       +  WV + + R V E+ V+      +  G EP+ LP C++   TL +LKLE +   +  S  +CF  +K  H+   K     ++P   S C  LEDL +      D    +++++ +LK L+L         ++    I+ PKL+ + + D       +  +  + +A +D+ Y
Sbjct:   26 KDVLVTSLLSKRWRFLWTLVPRLNYDLRL--------HDNTCPRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEKD------VGVWVRIGVDRFVRELSVS------YCSGEEPIRLPKCLFTCSTLAVLKLE-NITLEDASCYVCFQSLKTLHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPG-DNVKVVTVTAPSLKTLSLHKSSQAFEGDDDGFLIDTPKLKRVDIEDYWGGFCYIENMPEVVEANVDVIY 261          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL82_ARATH (F-box/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana GN=At5g22700 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 75/256 (29.30%), Postives = 123/256 (48.05%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRDGTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVE--IY--KPNMPDF-SICPVLEDLSIDYSLNFDWDADISISSQTLKRLNLMI----GGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYS 875
            ++AV TSILS+RW+ +W S P L  +       D   D    T F +F  R L  S    + KF L  ++    +  +  W+  A+ R +  +E    VD  F   +E V L   +Y SETL  L+L   FV       +  P +K  H+E  IY     + +F S CPVLEDL++   ++   +  + + S++L  L L++    G  I   +E +  I+AP+L +L + D    S+++  L S   A + + ++
Sbjct:   26 KNAVTTSILSTRWRSIWLSTPVLDID------IDAFDD---ATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLE----VDCRFSFHFEAVYL--TLYLSETLVSLRLH--FVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVIIDAPRLAYLSLKDDQSASFVISNLGSSAKADIKVSFN 264          
BLAST of FC878951 vs. ExPASy Swiss-Prot
Match: FBL57_ARATH (F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana GN=At3g58900 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.938e-14
Identity = 68/263 (25.86%), Postives = 123/263 (46.77%), Query Frame = 3
Query:  138 EDAVRTSILSSRWKLVWASLPNLMFNDKLCYRRD--GTSDNGALTRFENFVDRML-LSNSVSISKFSLHCQKKPRYLSRLKFWVALAIMRNVHEIEVNLPVDDPFEEGYEPVELPDCIYNSETLEILKLETDFVFKSPSSGICFPRVKKFHVEIYKPNMPDFSI----CPVLEDLSIDYSLNFDW-DADISISSQTLKRLNLMIGGPIVFANEHQATIEAPKLEHLHVNDGTLVSYLVYELHSLCDARLDIDYSRVRSDPVRA 902
            ++A  TS+LS RW+ ++A +P L F+D +    +       G L  F +FVDR+L L     I  FSL C K       +  W+   + R V ++++ +   D +        LP  +  S TL +L++ ++         +C P +K   ++     +  F I    CP LE+L +    N  W D+++++SS  LK L + + G     N    + +AP L + +  D     Y    L +L +A++++  ++ + + VRA
Sbjct:   22 KEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKC-KTGVDSDHVDRWICNVLARGVSDLDLFIDFRDLY-------SLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDSCWLCIGQFQILLLACPALEELDM---TNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVYFYYCDSLAEDYPQVNLKNLVEAQINLLLTQAQIEQVRA 273          
The following BLAST results are available for this feature:
BLAST of FC878951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
FDL34_ARATH1.214e-1629.30Putative F-box/FBD/LRR-repeat protein At5g44950 OS... [more]
FBL64_ARATH4.612e-1627.95F-box/LRR-repeat protein At3g59200 OS=Arabidopsis ... [more]
FDL33_ARATH1.027e-1531.87Putative F-box/FBD/LRR-repeat protein At5g25850 OS... [more]
FDL3_ARATH1.753e-1527.48F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidop... [more]
FDL31_ARATH1.753e-1529.62F-box/FBD/LRR-repeat protein At5g22660 OS=Arabidop... [more]
FBD10_ARATH2.289e-1526.69Putative FBD-associated F-box protein At3g50710 OS... [more]
FDL27_ARATH5.099e-1526.00F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidop... [more]
FDL38_ARATH1.484e-1425.58F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidop... [more]
FBL82_ARATH1.484e-1429.30F-box/LRR-repeat protein At5g22700 OS=Arabidopsis ... [more]
FBL57_ARATH1.938e-1425.86F-box/LRR-repeat protein At3g58900 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DD10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878951 ID=FC878951; Name=FC878951; organism=Citrus clementina; type=EST; length=912bp
AAAAAAATCAAATTGAAGGAAATTTTGAAACCCGTCGCAGCCAGAGACCG
GCTCGTCGTCGCCTGCGGCCTAGCCTTCCGTGAAAATAGAGTTGGTTGAT
AACTTTCACGATGAATAACTCAAAATCACGTAAAGTTGAAGATGCTGTTC
GAACTAGCATTTTATCTTCAAGATGGAAGCTTGTTTGGGCTTCTCTTCCC
AATCTTATGTTCAATGACAAGTTATGCTACAGACGTGATGGTACTTCAGA
TAATGGTGCGTTGACGAGGTTTGAGAATTTTGTCGACAGGATGCTTCTGT
CCAACTCAGTAAGCATTAGCAAGTTTTCCCTTCATTGTCAGAAGAAGCCC
AGGTATTTGTCTCGTCTGAAATTCTGGGTTGCACTTGCAATTATGCGAAA
TGTTCATGAGATCGAAGTTAATCTTCCGGTTGACGATCCATTTGAAGAGG
GTTACGAGCCTGTTGAGCTACCTGACTGCATCTACAATTCTGAAACACTT
GAAATTTTGAAACTAGAAACAGATTTTGTATTCAAGAGTCCTTCCTCTGG
GATATGTTTTCCAAGGGTCAAGAAATTTCATGTTGAAATATATAAGCCCA
ACATGCCTGACTTTTCTATTTGTCCTGTACTTGAAGATTTGTCAATTGAC
TACTCGCTAAATTTTGATTGGGACGCCGATATTAGCATTTCGTCTCAAAC
TCTAAAGAGGTTAAACTTGATGATAGGGGGACCTATTGTCTTTGCTAATG
AGCACCAGGCTACGATTGAGGCTCCAAAACTTGAACACCTCCATGTTAAT
GATGGCACATTGGTATCTTATCTGGTCTATGAGTTACATTCATTATGTGA
TGCACGCCTTGATATTGACTATTCGCGTGTGCGTAGTGATCCGGTTCGAG
CTGATCATGCAC
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