FC878953

Overview
NameFC878953
Unique NameFC878953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878953_ssr19 microsatellite FC878953_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7720 contig Ccv1_Contig7720:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.184e-70
Identity = 128/185 (69.19%), Postives = 155/185 (83.78%), Query Frame = 1
Query:  250 LERAASARRSLLEVGTELRSLRLRH--ASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            L +  SAR+    V TE++ LRL++   SGP PEPLSNYLDAQY+G IT+GTPPQSF+VVFDTGSSNLWVPSK+C +TNIAC++HNKY++ KSS++  NGTAF IQYGSGSLSG+LSTD + LGG++V +QTFAEAI+EPGL FVAAKFDGILG+G+SSI+VD V PVF NM  QGL+  PVFSF
Sbjct:   25 LHKTESARQHFRNVDTEIKQLRLKYNAVSGPVPEPLSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSGSLSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLGYSSISVDGVVPVFYNMFNQGLIDAPVFSF 209          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.737e-58
Identity = 110/195 (56.41%), Postives = 140/195 (71.79%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLR-----LRHASG------PSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR L EVG+E+  +      L+   G      P+PE L NY+DAQY+G I +GTPPQ F VVFDTGSSNLWVPS  CH  +IAC+LH+KYD+SKSS+Y  NGT FAI YG+GSLSGFLS D ++LG + +K Q F EA+ +PG+ F+AAKFDGILGM F  I+VD V P FDN++ Q L+++ +FSF
Sbjct:   25 PLTKFTSTRRMLTEVGSEIPDMNAITQFLKFKLGFADLAEPTPEILKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILGMAFPRISVDKVTPFFDNVMQQKLIEKNIFSF 219          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.728e-57
Identity = 112/195 (57.44%), Postives = 142/195 (72.82%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSL-----RLRHASG------PSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL++  S RR+L + G  +  L      L+H  G      P+PE L NY+DAQY+G I LGTP Q F VVFDTGSSNLW+PS  C +T+IAC+LH+KY+ +KSS+Y  NGT FAIQYGSGSLSG+LS D  ++G I V++Q F EAI +PG+AF+AAKFDGILGM +  I+VD VPPVFD M++Q  V+Q VFSF
Sbjct:   23 PLKKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVPPVFDMMMSQKKVEQNVFSF 217          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.271e-56
Identity = 112/195 (57.44%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLRHAS-----------GPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL++  S RR L + G     L   H S            P+PE L NYLDAQY+G I LGTPPQ F VVFDTGSSNLWVPS  C   +IAC+LH+KY+S KSS+Y  NGTAFAIQYGSGSLSG+LS D  ++G + +  Q F EAI +PG+AF+AAKFDGILGM +  I+VD V PVFDN+++Q  V+Q VFSF
Sbjct:   23 PLKKFRSIRRQLTDSGKRAEELLADHHSLKYNLSFPASNAPTPETLKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVAPVFDNIMSQKKVEQNVFSF 217          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.902e-54
Identity = 100/164 (60.98%), Postives = 130/164 (79.27%), Query Frame = 1
Query:  307 SLRLRHASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            S RL   +  +  P+S++ DAQY+G IT+GTP Q+F+VVFDTGSSNLW+PSKKC  T +AC LHNKY+S  SS+Y ANGT F IQYGSG++SGF+S D +++G +TVK+Q FAEA +EPG+AF  AKFDGILG+ F SI+V+ +PPVF NM++QGLV   +FSF
Sbjct:   41 SNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILGLAFQSISVNSIPPVFYNMLSQGLVSSTLFSF 204          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.480e-52
Identity = 97/157 (61.78%), Postives = 126/157 (80.25%), Query Frame = 1
Query:  328 SGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISLGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            SG  P P++N+++AQYF  IT+GTPPQ+F+VV DTGSSNLWVPS +C   +IAC LHNKY+SS+SS+Y+ NGT+F I+YGSGSLSGF+S D++++G IT+ +Q FAEA SEPGLAF   +FDGILG+G+  IAV+ + P F  MV Q LV +PVFSF
Sbjct:   70 SGNHPVPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQCG--SIACYLHNKYESSESSTYKKNGTSFKIEYGSGSLSGFVSQDRMTIGDITINDQLFAEATSEPGLAFAFGRFDGILGLGYDRIAVNGITPPFYKMVEQKLVDEPVFSF 224          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.239e-52
Identity = 108/202 (53.47%), Postives = 136/202 (67.33%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLR------------HASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQIS------LGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR++ EVG  +  L L+                P  E L NYLDAQY+G I +GTPPQ F VVFDTGSSNLWVPS  C   +IAC +H+KY+S KSS+Y  NGT+F I YGSGSLSG+LS D +S      LGGI V++Q F EA  +PG+ F+AAKFDGILGMG+  I+V+ V PVFDN++ Q LV++ +FSF
Sbjct:   25 PLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPRTKEPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSF 226          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.239e-52
Identity = 107/207 (51.69%), Postives = 134/207 (64.73%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLRH------------ASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQIS-----------LGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR++ EVG  +  L  +               GP PE L NY+DAQY+G I +GTPPQ F VVFDTGSSNLWVPS  C   +IAC +H+KY+S KSS+Y  NGT+F I YGSGSLSG+LS D +S           LGG+ V+ Q F EA  +PG+ F+AAKFDGILGM +  I+V+ V PVFDN++ Q LV Q +FSF
Sbjct:   25 PLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSF 231          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.215e-52
Identity = 106/205 (51.71%), Postives = 135/205 (65.85%), Query Frame = 1
Query:  247 PLERAASARRSLLEVGTELRSLRLRH------------ASGPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQIS---------LGGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            PL +  S RR++ E+G  +  L  +               GP PE L NY+DAQY+G I +GTPPQ F VVFDTGSSNLWVPS  C   +IAC +H+KY+S KSS+Y  NGT+F I YGSGSLSG+LS D +S         L GI V+ QTF EA  +PG+ F+AAKFDGILGM +  I+V+ V PVFDN++ Q LV++ +FSF
Sbjct:   25 PLHKFTSVRRTMTELGGPVEDLIAKGPISKYAQGAPAVTGGPIPEMLRNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSALSGLAGIKVERQTFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVEKNIFSF 229          
BLAST of FC878953 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.676e-51
Identity = 99/165 (60.00%), Postives = 123/165 (74.55%), Query Frame = 1
Query:  331 GPSPEPLSNYLDAQYFGPITLGTPPQSFRVVFDTGSSNLWVPSKKCHYTNIACMLHNKYDSSKSSSYRANGTAFAIQYGSGSLSGFLSTDQISL---------GGITVKEQTFAEAISEPGLAFVAAKFDGILGMGFSSIAVDCVPPVFDNMVAQGLVQQPVFSF 798
            GP PE L+NY+DAQY+G I +GTPPQ F VVFDTGS+NLWVPS  C   +IAC +H+KY+S KSS+Y  NGT F I YGSGSLSG+LS D +S+         GG+TV+ QTF EAI +PG+ F+AAKFDGILGM +  I+V+ V PVFDN++ Q LV + VFSF
Sbjct:   40 GPIPELLTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSF 204          
The following BLAST results are available for this feature:
BLAST of FC878953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ASPP_AEDAE1.184e-7069.19Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_CHICK6.737e-5856.41Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_CLUHA9.728e-5757.44Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHIHA1.271e-5657.44Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_DICDI5.902e-5460.98Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CARP_NEUCR2.480e-5261.78Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
CATD_RAT3.239e-5253.47Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN3.239e-5251.69Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_CANFA7.215e-5251.71Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_SHEEP4.676e-5160.00Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA87BA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878953 ID=FC878953; Name=FC878953; organism=Citrus clementina; type=EST; length=798bp
CACGCACGAGACAATTTCAATAAATAAATAGCAGTCACAACGAAGGCGAC
GGACAGTTCGCTTCGGAGAGAGCTTCGAGAATCTCTTCGCAACTACTTGT
AAAAAATAGTGTCGCATTTTGTCTGAACTTTGCGAATACAAAGACAATTT
TGTAGAACAGTTCGTAAGAAGGGCAGCATGAGTCGCCTGTCCCTGTTGTT
GGTGGTGGCGGTGGCGGCGAGCTGCGCCTCGGCTCTCGTCAGGGTGCCGC
TGGAGCGCGCGGCGTCGGCCCGGCGCTCGCTGCTGGAGGTGGGCACGGAG
CTCCGCTCGCTACGCCTGCGACACGCTTCAGGGCCTTCGCCTGAGCCACT
CTCCAACTACCTCGATGCGCAGTACTTCGGCCCCATAACGCTGGGCACGC
CGCCGCAGTCGTTCCGCGTGGTGTTCGACACCGGCTCCTCCAACCTCTGG
GTGCCCTCCAAGAAGTGCCACTACACCAACATCGCCTGCATGCTCCACAA
CAAATATGACAGCAGCAAGTCGAGCAGCTACCGCGCCAACGGCACCGCCT
TCGCCATCCAGTACGGCTCCGGCAGCCTCTCCGGGTTCCTCTCCACCGAC
CAGATCTCCCTGGGCGGCATCACGGTGAAGGAGCAGACGTTCGCGGAGGC
CATCTCGGAGCCGGGGCTCGCCTTCGTGGCCGCCAAGTTCGACGGCATCC
TCGGCATGGGCTTCAGCAGCATCGCCGTGGACTGCGTGCCGCCCGTGTTC
GACAACATGGTGGCGCAGGGGCTGGTGCAGCAGCCCGTGTTCTCGTTC
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