FC878981

Overview
NameFC878981
Unique NameFC878981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878981 vs. ExPASy Swiss-Prot
Match: KADC_SOLTU (Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.035e-21
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:  339 GPQSSLFSTQTVNRAEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 569
            GP S   + + VN+ ++VS++II  LLSKRLE G  +GE GFILDG PR+  QAEIL ++ +IDLVVN K  +  +V
Sbjct:   98 GPLSKQLA-EIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPERVLV 173

HSP 2 Score: 48.521 bits (114), Expect = 2.035e-21
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  643 PFTAVHFLLTIAGGS---LKEKLEAYAELS*PVEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 828
            PFT    L+T A  +   +KE+L  Y + S PVED+Y+ Q KLLEF +     E+W  LL  L+L
Sbjct:  213 PFTVCFKLITRADDTEAIVKERLSIYWDKSQPVEDFYRSQGKLLEFDLPGGIPESWPKLLEVLNL 277
[Close]
BLAST of FC878981 vs. ExPASy Swiss-Prot
Match: KADC1_ARATH (Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 3 
Query:  339 GPQSSLFSTQTVNRAEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIV 569
            GP S   S + VN+ ++VS++II  LLSKRLE G  RGE GFILDG PR+  QAEIL  + +IDLVVN K  +  +V
Sbjct:   94 GPLSQKLS-EIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLV 169
The following BLAST results are available for this feature:
BLAST of FC878981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KADC_SOLTU2.035e-2151.95Adenylate kinase, chloroplastic OS=Solanum tuberos... [more]
KADC1_ARATH3.635e-1354.55Probable adenylate kinase 1, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878981 ID=FC878981; Name=FC878981; organism=Citrus clementina; type=EST; length=909bp
CCACTGAGCTGCTTCCGAGCCATCGCAGTGACGGCTGCGCCTCTATCATA
TCGGCTTTTCCAGCTCACTACGAGCCGATTCTACGGCTCCGTCGCAGCAG
CTGAGCCGCTTTTCGATCCTGATAATTACTACAGTTATTACCAAGCCGAG
TCGGACTCGGACCAGCACCGCGACTCGCTCCGCTCCGTTACATTACCTGA
CACGGAGGGCCGGGAAAGAAGAAGAGGAGTGCAGTGGGCTTTCATTGGAA
GCCCACGCGCCAAGAAGCACGTGTACGCTGAAATGCTGTCGAAGCTTCTA
GAAGTTCCTCGCATTTCTATGTCCAGTCTCGTCCGCCAGGACCTCAGTCT
TCGCTCTTCTCTACACAAACAGTGAATAGAGCGGAAGTTGTTTCGGAGGA
TATAATATTTGGGCTGTTGTCAAAGAGGTTGGAAGATGGTTATTACAGAG
GTGAGATTGGTTTTATTCTGGATGGATTACCTCGTTCCCGGATCCAAGCT
GAGATTCTTGACCAACTTGCTGAGATTGATTTGGTTGTAAACTTCAAATG
TGCAGACAATTTCATTGTGACAAATCGAGGTATTATCTTTTCCCCCTTTT
CCTAGAATATTAAGATATGAGCAACTCCTCCTTGACGCCTTTCCTTTTAC
GGCCGTGCACTTTCTATTGACTATTGCAGGAGGTTCCTTGAAGGAAAAAC
TTGAAGCATACGCTGAGCTGAGCTAGCCAGTGGAAGATTATTACCAGAAG
CAGAAAAAACTTCTTGAGTTTCAAGTTGGCAGTGCACCTGTAGAGACGTG
GCAAGGACTTCTGACTGCATTGCATCTACAGCATATAAATGCTGCCTATT
CTTCACAAGAACTAATGAAAAGATCCCCATTACTTTAGACTTAACGTTAC
CAATTTTTC
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