FC878983 | Citrus Genome Database

Overview


Name	FC878983
Unique Name	FC878983
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	787

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig8193	contig	Ccv1_Contig8193:1..787.	BLAST: Citrus Unigene V1 Contigs to SwissProt

Homology

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BLAST of FC878983 vs. ExPASy Swiss-Prot
Match: GCH1_NEUCR (GTP cyclohydrolase 1 OS=Neurospora crassa GN=104H10.80 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 3

Query:  435 KSPKAESTTNGEQKKS----AKQYEEVGDEEVEALRAHTAARDLRDEAPPTPAAESGSQSPFITANPT--VDFDGLSWPSAGTLERLRERDNPEEAKARLAKLSGAVRTILECIGEDPDREGL 785
            KS K  + ++GE++ S    A+   +  +E     +           A P+   E  S S  +T +P+  +DFDGLS PS GT ERL E +   + + RL K+ GAVRT+LECIGEDPDREGL
Sbjct:   32 KSSKKRAHSSGERRSSVSKPARDPSDKPEESPSKKKKRKTTSSTAAAAVPSTITEEVSPSTSVTRSPSPVIDFDGLSRPSRGTRERLEETE--AQKQERLDKMKGAVRTLLECIGEDPDREGL 152

The following BLAST results are available for this feature:

BLAST of FC878983 vs. ExPASy Swiss-Prot

BLAST of FC878983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
GCH1_NEUCR	5.222e-15	40.65	GTP cyclohydrolase 1 OS=Neurospora crassa GN=104H1...	[more]

Properties


Property Name	Value
Genbank description	IC0AAA94CG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CG02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC878983 ID=FC878983; Name=FC878983; organism=Citrus clementina; type=EST; length=787bp
CTTCTCTGTTTGCACTACAAGACTGTTTGCTTGCTGTCATCCCTGTATTT
CATGGACTATTTGTTCTACCACATCGAGGCCGCAAACTCCAATTACTACC
TGTAAAACCGCACTTGTCGAACTGTCTTACCATCGATCCTTGCCAGCAGC
ATTCGCGAAGTGGAACCTCGTACACAACACCCTCGAAACTCGAGTCTCAA
CATCCACGCGCTAGCATGAGTAATCAGCACTCTTACGCCTCCAAGCCCAC
AGCAATACCCTCGCATCTCATCAACGGCCACTCGCCTCTGCATTCTGCCT
CTTCCGCTTCAATGGCCGACAGTGACCGCGAGGAGCGCGACACCACCTTC
GCTTCGATTCAAAACTCAATGGGCCCGCAAAAGGTTGCCATGTCGCTGGA
TGAACTGTCGTTGGATGACTCTGCTGCTGCGGGAAAGTCACCAAAAGCTG
AATCCACCACCAACGGCGAGCAGAAAAAGTCCGCGAAGCAGTACGAGGAG
GTCGGAGACGAGGAGGTAGAAGCATTGCGAGCGCACACAGCCGCGCGGGA
TCTCCGTGATGAGGCACCTCCCACCCCTGCAGCAGAGAGTGGCAGCCAAA
GTCCGTTCATCACCGCCAACCCGACTGTCGACTTCGATGGCCTTTCATGG
CCGAGCGCAGGTACGCTAGAGCGTCTGAGAGAACGTGACAACCCAGAGGA
GGCCAAAGCGCGGTTGGCGAAGCTTTCGGGTGCTGTGCGCACGATTCTCG
AGTGCATTGGCGAGGATCCCGATCGGGAGGGTCTGCA