FC878986

Overview
NameFC878986
Unique NameFC878986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878986_ssr386 microsatellite FC878986_ssr386:386..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6153 contig Ccv1_Contig6153:41..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.563e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.653e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.653e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.653e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVL 116          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: HSV2_YARLI (SVP1-like protein 2 OS=Yarrowia lipolytica GN=HSV2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  547 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            + +++  +++ ++NQD  CFA   + GFR+Y  +P     +R+   GG  +++ML R N LA+VG G N ++P  K++IWDD +S+      F S V +V LSR +IVVVL
Sbjct:   10 ASMEDQPILNAAFNQDSACFAICHNRGFRVYVTDPMDLRVQREFDDGGIGVIQMLHRTNYLAVVGGGSNPKFPQNKLVIWDDLKSKPALSLEFLSPVLNVLLSRTKIVVVL 120          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: ATG18_YARLI (Autophagy-related protein 18 OS=Yarrowia lipolytica GN=ATG18 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            VS+NQDY C + GT  G++IYNC+PF + F +    GG  IVEMLF  +++A+VG GD  Q  P ++ I +  +   I E  F + V  V+L+R+R+VV+L
Sbjct:    8 VSFNQDYSCVSVGTPQGYKIYNCDPFGKCFSK--ADGGMGIVEMLFCTSLIAVVGMGDQPQNSPRRLKIVNTKRQSTICELTFPTAVLGVRLNRQRLVVLL 106          
BLAST of FC878986 vs. ExPASy Swiss-Prot
Match: HSV2_DEBHA (SVP1-like protein 2 OS=Debaryomyces hansenii GN=HSV2 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  559 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVL 879
            E++++++++NQD GCFA G   GF +YN  P     K  F  +    G   + ML R N LALVG G N ++   K++IWDD + +      F S V +V LSR RI+VVL
Sbjct:   15 ELQILNINFNQDQGCFAVGHEYGFLVYNTNPIDIRVKRNFNINGHGSGIAHITMLHRTNYLALVGGGKNPKFANNKLVIWDDLKRKNSLNLEFMSPVLNVLLSRIRIIVVL 125          
The following BLAST results are available for this feature:
BLAST of FC878986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
WIPI3_XENTR2.728e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_CHICK2.728e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA3.563e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB4.653e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE4.653e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN4.653e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE6.077e-2652.88WD repeat domain phosphoinositide-interacting prot... [more]
HSV2_YARLI3.023e-1738.74SVP1-like protein 2 OS=Yarrowia lipolytica GN=HSV2... [more]
ATG18_YARLI2.559e-1643.56Autophagy-related protein 18 OS=Yarrowia lipolytic... [more]
HSV2_DEBHA5.701e-1640.54SVP1-like protein 2 OS=Debaryomyces hansenii GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878986 ID=FC878986; Name=FC878986; organism=Citrus clementina; type=EST; length=879bp
CTCTCACAAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATT
TCTCATATCACAGCATCAAGGTTAGTGTCTCTATTCGATTTCTGCTTTCT
GTACTCTTCGATTAAATCACTTTATTTGTTTGGAATTATATAATATAGTA
AGGAATCAGGAGGCCCGACTGATATTTTCACGATCGCAAATTTCCCGTTT
CTGATCATTGATCACTGGCTGCTGCCTGCTGGTGATTAGATGCATTAACT
CTACATGCTATGAGAGATACAGAAGTTTGCAGAATCTGTGGGAATTAGCG
TATTTGTATGACATTTCATAATATTGTGTGAATACAGGGGGTGCCACTGA
AATTATTCACAATCGAGAAGATTTTCATATTTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGACCCTTTCTTCGTCCCACATGACTTCAACTGTTTCGACA
TCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGGGC
TTCGGCTTCGGCTTTGGCTTCATTTGGCCACCCGCAAACGGGGTTCAGTG
ATGTTGACGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGT
TGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCC
GTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTG
TTGAGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGAT
AATTCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAG
CAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAAT
TGAGTAGGGAACGAATTGTGGTTGTTCTT
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