FC878987

Overview
NameFC878987
Unique NameFC878987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878987 vs. ExPASy Swiss-Prot
Match: PPR58_ARATH (Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.339e-75
Identity = 145/267 (54.31%), Postives = 186/267 (69.66%), Query Frame = 3 
Query:  150 IFTRTKTLFAKTLNPN-LKSLS----ISTFTFLSQEPQLA----------ESXXXXXXXXXXXXGSPVYSENWRNQAPNSETLAQSLIPLGLLKNASTQRVQAISQTIDAQTLMDLFANWMTSKRWSDMKEMFEYWIRSLDVHGKPNKPDVGLYNHYIRANFMLEASTAELIDLVAQTEDFAIVPNTASYNLVLKAMHQAGESEAAQKWLERMLQGGKDSLPDDETYDLLISLLFSKGEIDSALKYIDMALKSGYMLSMNVFTECVR 905
            +FTR++    KTL PN   S S    IS   FLSQ+P LA                        GSP+Y ENWR+  PN+ +  QSL+PLG L  A   R++A+S+T+D  +L+++FA+W  S+RWSDMK++FE W+RSLD +GKPNKPDV LYNHY+RAN M+ AS  +++DLVA  E+F++ PNTASYNLVLKAM+QA E+EAA K LERML  GKDSLPDDE+YDL+I + F  G+ D A+K +D ALKSGYMLS +VFTECVR
Sbjct:    5 LFTRSRISLLKTLKPNPFTSASPIRAISGTPFLSQDPLLATESTDHDPSNHQSTSTPLPPNPATGSPLYQENWRSPIPNTPSFNQSLVPLGFLNQAPAPRIRALSETLDMNSLLNMFADWTASQRWSDMKQLFEVWVRSLDKNGKPNKPDVNLYNHYLRANLMMGASAGDMLDLVAPMEEFSVEPNTASYNLVLKAMYQARETEAAMKLLERMLLLGKDSLPDDESYDLVIGMHFGVGKNDEAMKVMDTALKSGYMLSTSVFTECVR 271
The following BLAST results are available for this feature:
BLAST of FC878987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPR58_ARATH3.339e-7554.31Pentatricopeptide repeat-containing protein At1g26... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DC05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878987 ID=FC878987; Name=FC878987; organism=Citrus clementina; type=EST; length=910bp
CCAGCATCCAGGTAACATCTTTCACATGAAACCTCAACTCCTCAAGCCGC
TTGCGGAACAAAACCCTAAACGGAAGCTCTACTATTAGTGTTACTGCTTT
CACTGCACTGGCTTGGAACCCACTTGAGTGAATGGCATCTCAAATGGCGA
TCTTCACTCGAACAAAAACCCTTTTCGCTAAAACCCTAAACCCTAATCTC
AAATCCCTCTCAATCTCCACCTTCACTTTCCTCTCCCAAGAACCCCAGCT
CGCCGAGTCAACTCCGACTACACCTCTCCCGCCAAATCCTGCCACCGGCA
GCCCAGTTTACAGTGAGAACTGGCGGAACCAGGCACCCAACTCGGAAACC
TTGGCTCAGTCGTTGATCCCTCTTGGGCTCCTCAAGAATGCCTCAACCCA
ACGCGTTCAGGCGATATCACAAACAATTGATGCGCAGACTTTAATGGATC
TTTTTGCGAACTGGATGACGAGTAAGAGATGGTCTGATATGAAGGAAATG
TTTGAGTATTGGATTCGAAGTCTTGATGTGCATGGGAAGCCTAATAAGCC
TGATGTTGGTTTGTATAATCATTATATAAGGGCTAATTTCATGTTGGAGG
CCTCTACTGCTGAATTGATTGATTTAGTTGCACAAACGGAGGATTTTGCC
ATTGTCCCCAATACTGCGTCTTATAATTTGGTCCTCAAGGCCATGCATCA
GGCCGGAGAGTCCGAGGCTGCTCAGAAGTGGCTCGAACGGATGCTCCAAG
GAGGGAAGGATTCCCTGCCTGATGATGAGACATATGACTTACTTATCAGC
CTGCTGTTCTCAAAGGGCGAGATTGATTCTGCCTTGAAATATATAGACAT
GGCTTTGAAATCTGGTTATATGCTGTCTATGAATGTGTTTACTGAATGTG
TGCGGGGCTG
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