FC878990

Overview
NameFC878990
Unique NameFC878990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5260 contig Ccv1_Contig5260:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878990 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 66/216 (30.56%), Postives = 92/216 (42.59%), Query Frame = 3
Query:   66 DGTITRDYSNYPSTAATPDPNDHTIAVFKDVPVNQSNKTWVRIFLPRQALDSSTKTKL---------PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 683
            DGT  R  + +       + N        DV +++      R++ P  A  S + T L         P+IV+ HGG+    SA + IY  LC  +     AV+VSV+YR APE+R P AY D   VL W+ ++   WL    D     F+ GDS GGN+ ++                          FGG +RTESE RL  +  V     D  W
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS--WLRSKKDSKVRIFLAGDSSGGNIVHN-----VAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYW 246          
BLAST of FC878990 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 67/226 (29.65%), Postives = 93/226 (41.15%), Query Frame = 3
Query:   63 ADGTITRDYSNYPSTAATPDPNDHTIAVFKDVPVNQSNKTWVRIF--------------LPRQAL----DSSTKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLSS-CFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 683
            ADGT  RD   Y       +          D  ++QS    VRI+              + R  L    D+      P+I++ HGG+ +  SA++ IY  LC         V+VSV+YR APEHR P AY D    L W+ +  + ++    D  +  F+ GDS GGN+A+H                          FGG +RTESE RL  +  V     D  W
Sbjct:   37 ADGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHH-----VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYW 255          
BLAST of FC878990 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 64/221 (28.96%), Postives = 92/221 (41.63%), Query Frame = 3
Query:   66 DGTITRDYSNY--PSTAATPDPNDHTIAVFKDVPVNQSNKTWVRIFLPRQALDS------------STKTKLPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 683
            DG+  RD + +      A   P D    VF    V+ +     RI+ P   L              ST   +P++++ HGG+    SA + IY   C  +      V+VSVDYR +PEHR P AY D    L+W+K+    WL    D +   ++ GDS GGN+A++                          FGG +RT+SE  L  +  V     D  W
Sbjct:   38 DGSFNRDLAEFLDRKVPANSFPLD---GVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS--RVWLQSGKDSNVYVYLAGDSSGGNIAHN-----VAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYW 248          
BLAST of FC878990 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 62/218 (28.44%), Postives = 88/218 (40.37%), Query Frame = 3
Query:   66 DGTITRDYSNYPSTAATPDPNDHTIAVFKDVPVNQSNKTWVRIFLPRQALDSSTKTKL-----------PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 683
            DGT  R  + Y     T + N        DV +++      R++ P  A      + L           P+I++ HGG+    SA + IY  LC  +      V+VSV+YR APE+  P AY D    L+W+ +    WL    D     F+ GDS GGN+A++                          FGG +RTESE  L  +  V     D  W
Sbjct:   38 DGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS--RSWLKSKKDSKVHIFLAGDSSGGNIAHN-----VALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYW 248          
The following BLAST results are available for this feature:
BLAST of FC878990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH6.777e-1830.56Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ1.669e-1629.65Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH1.846e-1528.96Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.041e-1428.44Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878990 ID=FC878990; Name=FC878990; organism=Citrus clementina; type=EST; length=685bp
ACAAAATTGCTCCATCTGAGACAACCAGTGATTCACCTAACTACATAATG
TTCATCGTCAACGCCGACGGCACGATCACTCGCGATTACAGCAATTACCC
AAGCACCGCAGCCACACCAGATCCAAATGACCACACAATTGCTGTCTTCA
AAGATGTCCCCGTCAACCAATCAAACAAGACTTGGGTCCGCATATTCCTG
CCCCGTCAAGCACTTGATTCTTCCACCAAGACCAAGCTTCCCCTTATTGT
TTATGTCCACGGCGGAGCCCTCATTCTCTTAAGCGCAGCCACAAAAATCT
ACCATGATTTATGCTCAGATATTGCAGCCCGAGTCCCTGCTGTGATTGTG
TCCGTAGATTACAGGCTTGCCCCCGAGCACCGCCTGCCAGCGGCCTACTA
TGATGCCCTGGAAGTCTTGCACTGGATCAAAACCACTCAAGAACACTGGT
TAATACAGTACGCTGACTTGTCGTCTTGTTTCATAATGGGCGATAGCGGA
GGTGGCAACGTAGCTTACCACGCAGCACTGCTAGCAGCGGCGCAAGTTGA
TGATTTGTTGCCTTTGAAGATCAGAGGTCTGATATTGCTCAAGCCTTTCT
TTGGTGGGGTCAAAAGGACGGAGTCGGAGTTGAGGTTGGCGAATCAACCG
ATTGTACCACCATCTAGTACTGATTGACTGTGGCA
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