FC878993

Overview
NameFC878993
Unique NameFC878993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12849 contig Ccv1_Contig12849:26..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_HUMAN (N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.223e-37
Identity = 87/244 (35.66%), Postives = 131/244 (53.69%), Query Frame = 2
Query:  203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913
            W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L   +    C       S+     P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQDP+ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FP                 G GYRA+Y++ +   +  + GG A WL  LR+   +EA  ALC LPGVG KVA CI L +LD+  A+
Sbjct:   23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLA-WLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAV 265          
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_MOUSE (N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 5.268e-36
Identity = 87/244 (35.66%), Postives = 129/244 (52.87%), Query Frame = 2
Query:  203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913
            W  +   +SEL L L   +GQ+FRWK+  P  ++G +   + +L   ++   C       S+ +  +      L  +  + +SL +L+  +++ D  F  +A+   G R+LRQDP ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FP                 G GYRA+Y+  +   +  + GG A WL  LR    +EA  ALCTLPGVG KVA CI L +LD+  A+
Sbjct:   23 WASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPNLHALAGPEAETHLRKLGLGYRARYVRASAKAILEEQGGPA-WLQQLRVAPYEEAHKALCTLPGVGAKVADCICLMALDKPQAV 265          
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_RAT (N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.460e-35
Identity = 85/244 (34.84%), Postives = 127/244 (52.05%), Query Frame = 2
Query:  203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913
            W  +   +SEL L L   +GQ+FRW++  P  ++G +   + +L   ++   C        +    +      L  +  + +SL +L+  +++ D  F  +A+   G R+LRQDP ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FP                 G GYRA+Y+  +   +  + GG A WL  LR    +EA  ALCTLPGVG KVA CI L +LD+  A+
Sbjct:   23 WASIPCPRSELRLDLVLASGQSFRWREQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASVDSHFQSVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLVQLDDVTYHGFPNLHALAGPEVETHLRKLGLGYRARYVCASAKAILEEQGGPA-WLQQLRVASYEEAHKALCTLPGVGTKVADCICLMALDKPQAV 265          
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_DROME (N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.645e-22
Identity = 76/239 (31.80%), Postives = 116/239 (48.54%), Query Frame = 2
Query:  212 LNLTQSELSLPLTFPTGQTFRWKQT--GPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAK---SALLDFLNMGISLGELWEGFSASDCRFAELAKYLAG-ARVLRQDPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGKVEGFEFHEFPXXXXXXXXXXXXXXN----AGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSL 895
            + L+  E  L  T   GQ+FRW+    G     G V  +   +   +   + Y  + + S  A K   S + D+L +   L    + + + D  F    K+L+   R+L Q+P E +  FLCS NNNI RI+ M++ F A+ G+ +G   G + + FP                   A FGYRAK+I  T+  +Q K  GG  W +SL+ +  ++A + L  LPG+G KVA CI L S+
Sbjct:   27 IGLSLEECDLERTLLGGQSFRWRSICDGNRTKYGGVVFNTYWVLQQEESFITYEAYGTSSPLATKDYSSLISDYLRVDFDLKVNQKDWLSKDDNFV---KFLSKPVRLLSQEPFENIFSFLCSQNNNIKRISSMIEWFCATFGTKIGHFNGADAYTFPTINRFHDIPCEDLNAQLRAAKFGYRAKFIAQTLQEIQKK--GGQNWFISLKSMPFEKAREELTLLPGIGYKVADCICLMSM 260          
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_YEAST (N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae GN=OGG1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.393e-20
Identity = 76/250 (30.40%), Postives = 123/250 (49.20%), Query Frame = 2
Query:  200 KWTPLNLTQSELSLPLTFPTGQTFRW---KQTGPLQYTGPVGPH----LISLKHLQNGDVCYHIHTSP--SEPAAKSALLDFLNMGISLGELWEG-FSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTV-----DVLQSKHGGGAEWLLSLRK-LDLQEAIDALCTLPGVGPKVAACIALFSL 895
            K+  L + +SEL L      GQ+FRW   ++      T  +G      ++ L+  +  ++   +      ++ A K+ L+ +  + +SL  L++  +  SD  FA+L+    G R+L Q+P E L+ F+CSSNNNI+RIT+M + L S  G+ +  ++G  +H FP                 GFGYRAKYI  T      D  ++       +L S+ K    ++  + L +  GVGPKVA C+ L  L
Sbjct:    4 KFGKLAINKSELCLANVLQAGQSFRWIWDEKLNQYSTTMKIGQQEKYSVVILRQDEENEILEFVAVGDCGNQDALKTHLMKYFRLDVSLKHLFDNVWIPSDKAFAKLSPQ--GIRILAQEPWETLISFICSSNNNISRITRMCNSLCSNFGNLITTIDGVAYHSFPTSEELTSRATEAKLRELGFGYRAKYIIETARKLVNDKAEANITSDTTYLQSICKDAQYEDVREHLMSYNGVGPKVADCVCLMGL 251          
The following BLAST results are available for this feature:
BLAST of FC878993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
OGG1_HUMAN6.223e-3735.66N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE... [more]
OGG1_MOUSE5.268e-3635.66N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE... [more]
OGG1_RAT4.460e-3534.84N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Og... [more]
OGG1_DROME9.645e-2231.80N-glycosylase/DNA lyase OS=Drosophila melanogaster... [more]
OGG1_YEAST1.393e-2030.40N-glycosylase/DNA lyase OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878993 ID=FC878993; Name=FC878993; organism=Citrus clementina; type=EST; length=915bp
ATCGGCCATCTCTCCCGTCCCCCACTCTCCATGTCCATGCGGGAGGGGGG
AAGACTGAAAAAGAGAAGAATCAGGGACCCAATAATTGATCATGCAGTCA
CTGAAGAACTCCCCCTCCCCACTGAAAAGGCCAAGACTCACGCCGCAGCC
GCCGCCAACTCCACCAAACCCGCAGACTCTCACCACCAATAAACCCTCAA
AATGGACCCCACTCAACCTCACCCAATCAGAGCTCTCACTACCCCTCACC
TTCCCGACCGGCCAAACCTTCCGCTGGAAACAAACGGGTCCTCTCCAATA
CACCGGCCCCGTTGGGCCCCATCTCATCTCCCTCAAGCACCTCCAAAACG
GCGACGTTTGCTACCACATCCACACTTCCCCCTCAGAACCCGCCGCCAAA
TCGGCTCTCCTGGATTTTCTTAACATGGGTATTTCCCTGGGTGAGCTCTG
GGAGGGATTTTCGGCTTCTGATTGCCGTTTTGCTGAGCTGGCCAAATATT
TGGCGGGTGCCCGGGTTTTGAGGCAGGACCCGGTTGAGTGCTTGCTTCAG
TTTCTCTGTTCTTCGAACAATAATATTGCGAGGATCACTAAAATGGTTGA
CTTTTTGGCGAGTTTGGGGAGTCATTTGGGTAAAGTCGAGGGTTTTGAGT
TTCATGAGTTCCCGTCTTTGGAAAGATTATCATTAGTCTCAGAGGTCGAG
CTTAGAAATGCTGGTTTTGGTTACAGGGCTAAATACATAACTGGCACTGT
AGATGTTTTGCAATCAAAACATGGCGGAGGAGCAGAATGGCTTCTTTCTC
TTCGTAAATTGGATCTCCAGGAGGCGATTGATGCTCTCTGTACTTTACCT
GGAGTCGGTCCTAAAGTAGCAGCATGCATAGCTCTATTCTCTCTTGATCA
GCATCATGCCATTCC
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