FC878993
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_HUMAN (N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 6.223e-37 Identity = 87/244 (35.66%), Postives = 131/244 (53.69%), Query Frame = 2 Query: 203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913 W + +SEL L L P+GQ+FRW++ P ++G + + +L + C S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL F+CSSNNNIARIT MV+ L + G L +++ +H FP G GYRA+Y++ + + + GG A WL LR+ +EA ALC LPGVG KVA CI L +LD+ A+ Sbjct: 23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLA-WLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAV 265
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_MOUSE (N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 5.268e-36 Identity = 87/244 (35.66%), Postives = 129/244 (52.87%), Query Frame = 2 Query: 203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913 W + +SEL L L +GQ+FRWK+ P ++G + + +L ++ C S+ + + L + + +SL +L+ +++ D F +A+ G R+LRQDP ECL F+CSSNNNIARIT MV+ L + G L +++ +H FP G GYRA+Y+ + + + GG A WL LR +EA ALCTLPGVG KVA CI L +LD+ A+ Sbjct: 23 WASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPNLHALAGPEAETHLRKLGLGYRARYVRASAKAILEEQGGPA-WLQQLRVAPYEEAHKALCTLPGVGAKVADCICLMALDKPQAV 265
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_RAT (N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.460e-35 Identity = 85/244 (34.84%), Postives = 127/244 (52.05%), Query Frame = 2 Query: 203 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 913 W + +SEL L L +GQ+FRW++ P ++G + + +L ++ C + + L + + +SL +L+ +++ D F +A+ G R+LRQDP ECL F+CSSNNNIARIT MV+ L + G L +++ +H FP G GYRA+Y+ + + + GG A WL LR +EA ALCTLPGVG KVA CI L +LD+ A+ Sbjct: 23 WASIPCPRSELRLDLVLASGQSFRWREQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASVDSHFQSVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLVQLDDVTYHGFPNLHALAGPEVETHLRKLGLGYRARYVCASAKAILEEQGGPA-WLQQLRVASYEEAHKALCTLPGVGTKVADCICLMALDKPQAV 265
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_DROME (N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 9.645e-22 Identity = 76/239 (31.80%), Postives = 116/239 (48.54%), Query Frame = 2 Query: 212 LNLTQSELSLPLTFPTGQTFRWKQT--GPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAK---SALLDFLNMGISLGELWEGFSASDCRFAELAKYLAG-ARVLRQDPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGKVEGFEFHEFPXXXXXXXXXXXXXXN----AGFGYRAKYITGTVDVLQSKHGGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSL 895 + L+ E L T GQ+FRW+ G G V + + + + Y + + S A K S + D+L + L + + + D F K+L+ R+L Q+P E + FLCS NNNI RI+ M++ F A+ G+ +G G + + FP A FGYRAK+I T+ +Q K GG W +SL+ + ++A + L LPG+G KVA CI L S+ Sbjct: 27 IGLSLEECDLERTLLGGQSFRWRSICDGNRTKYGGVVFNTYWVLQQEESFITYEAYGTSSPLATKDYSSLISDYLRVDFDLKVNQKDWLSKDDNFV---KFLSKPVRLLSQEPFENIFSFLCSQNNNIKRISSMIEWFCATFGTKIGHFNGADAYTFPTINRFHDIPCEDLNAQLRAAKFGYRAKFIAQTLQEIQKK--GGQNWFISLKSMPFEKAREELTLLPGIGYKVADCICLMSM 260
BLAST of FC878993 vs. ExPASy Swiss-Prot
Match: OGG1_YEAST (N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae GN=OGG1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.393e-20 Identity = 76/250 (30.40%), Postives = 123/250 (49.20%), Query Frame = 2 Query: 200 KWTPLNLTQSELSLPLTFPTGQTFRW---KQTGPLQYTGPVGPH----LISLKHLQNGDVCYHIHTSP--SEPAAKSALLDFLNMGISLGELWEG-FSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGKVEGFEFHEFP-XXXXXXXXXXXXXXNAGFGYRAKYITGTV-----DVLQSKHGGGAEWLLSLRK-LDLQEAIDALCTLPGVGPKVAACIALFSL 895 K+ L + +SEL L GQ+FRW ++ T +G ++ L+ + ++ + ++ A K+ L+ + + +SL L++ + SD FA+L+ G R+L Q+P E L+ F+CSSNNNI+RIT+M + L S G+ + ++G +H FP GFGYRAKYI T D ++ +L S+ K ++ + L + GVGPKVA C+ L L Sbjct: 4 KFGKLAINKSELCLANVLQAGQSFRWIWDEKLNQYSTTMKIGQQEKYSVVILRQDEENEILEFVAVGDCGNQDALKTHLMKYFRLDVSLKHLFDNVWIPSDKAFAKLSPQ--GIRILAQEPWETLISFICSSNNNISRITRMCNSLCSNFGNLITTIDGVAYHSFPTSEELTSRATEAKLRELGFGYRAKYIIETARKLVNDKAEANITSDTTYLQSICKDAQYEDVREHLMSYNGVGPKVADCVCLMGL 251 The following BLAST results are available for this feature:
BLAST of FC878993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878993 ID=FC878993; Name=FC878993; organism=Citrus clementina; type=EST; length=915bpback to top |