FC878998

Overview
NameFC878998
Unique NameFC878998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length932
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13852 contig Ccv1_Contig13852:56..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_ARATH (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 2.009e-99
Identity = 169/225 (75.11%), Postives = 193/225 (85.78%), Query Frame = 3
Query:  228 IMIQGARVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGIVPSPAAP 902
            ++I+ ARV L+ WQQ           L+DPRRADLIAALGETTG+PAFE VL+RMK+S EGRA+LLERPRV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA RAREVHD WHTLFGLPTNLIGES+LKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +HY PWA+RAG Q TDLMCVYYE+HF EDLE +R+KWGI+P+P  P
Sbjct:    1 MIIERARVPLSRWQQAAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEGRAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVATRAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKHYLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_AEDAE (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.696e-48
Identity = 95/194 (48.97%), Postives = 128/194 (65.98%), Query Frame = 3
Query:  306 LLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGH--AWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            L+DPRR D+IA LGETTG PA E++  +M+ S EGR +L ++PR+    V       LP NTFG  Y SFM     +PD R  V+FMD  ELAYV  R RE HD  HT+FG+PTN++GE A+K +E   + LPMC+   I G+ R   KQR+ + Q Y PWA+RAG ++  LMCVY+E+ + +D+E+LRK+  I
Sbjct:   75 LVDPRRHDMIACLGETTGVPALENIRDQMRNSDEGRQILEDKPRINTRTVNMDALKKLPENTFGYQYVSFMEKYEITPDSRMEVKFMDDPELAYVMTRYRETHDLVHTVFGMPTNMLGEVAIKWVEAINIGLPMCYGGAIFGAFRLRPKQRQNYLQRYLPWALRAGQRARPLMCVYWEKRWEQDIEELRKELNI 268          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROAN (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila ananassae GN=GF24309 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.373e-44
Identity = 87/214 (40.65%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LLDPRR D+IA LGETTG  A E++L  M+ S EG+ ++ E+PR+    +       LP ++FGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+ G+PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G +S  LM VY+E+ + + L+DLR + GI
Sbjct:   47 RIEISPFQRVILGAGSSIAALLDPRRHDMIACLGETTGEGALENILDTMQASEEGQRIMAEKPRIHTSTIDFKLLESLPADSFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLGMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRSKPLMPVYWEKRWEQKLQDLRAELGI 260          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROYA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila yakuba GN=GE22150 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.483e-43
Identity = 84/214 (39.25%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LLDPRR D+IA LGETTG  A  ++L  M+ S EG+ ++ ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G +S  LM VY+E+ + +++ +LR + GI
Sbjct:   49 RIEISPFQRVFLGAGSSIAALLDPRRHDMIACLGETTGEDALLTILDTMQASEEGQRIMADKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRSKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROER (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila erecta GN=GG15811 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.940e-43
Identity = 83/214 (38.79%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LLDPRR D+IA LGETTG  A  ++L  M+ S EG+ ++ ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE ++K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ DLR + GI
Sbjct:   49 RIEISPFQRVFLAAGSSIAALLDPRRHDMIACLGETTGEDALWTILDSMQASEEGQRIMADKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEEPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVSVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMPVYWEKRWEQNIHDLRSELGI 262          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROWI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila willistoni GN=GK18052 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.013e-42
Identity = 89/219 (40.64%), Postives = 131/219 (59.82%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVG--HAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGIVPSPA 896
            R+++  +Q+           +LDPRR D+IA LGETTG  A  ++L  M+ S EG+ +L+++PR+    +       LPP+TFGAAY  F+   N +PD R PVRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + + Y PWAI  G +   LM VY+EQ + ++L DL KK   +  PA
Sbjct:   40 RIEITPFQRMLLGAGSSVAAILDPRRHDMIACLGETTGEGALWNILDTMEASEEGQRILIDKPRIHTSTIDFKRLETLPPDTFGAAYVKFLKDNNVTPDSRMPVRFLEDPKLAYLMTRYRECHDLIHTVLNMPTNMLGEVAVKWVEALNTNLPMCYGGAVFGAVRLRPKQRREYLKRYLPWAIDNGKRMKPLMPVYWEQRWEQNL-DLAKKTSPIMLPA 257          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila simulans GN=GD12405 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.948e-42
Identity = 82/214 (38.32%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:   49 RIEISPFQRLFLGTGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMADKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRAKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROSE (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila sechellia GN=GM24332 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.948e-42
Identity = 82/214 (38.32%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:   49 RIEISPFQRLFLGAGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMADKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRAKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROME (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila melanogaster GN=CG32174 PE=3 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.948e-42
Identity = 82/214 (38.32%), Postives = 131/214 (61.21%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R++++ +Q+           LL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G ++  LM VY+E+ + +++ +LR + GI
Sbjct:   49 RIEISPFQRLFLGAGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMADKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMPVYWEKRWEQNIHELRSELGI 262          
BLAST of FC878998 vs. ExPASy Swiss-Prot
Match: COQ4_DROPS (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA16732 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.463e-41
Identity = 82/214 (38.32%), Postives = 127/214 (59.35%), Query Frame = 3
Query:  246 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVG--HAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMQSTDLMCVYYEQHFHEDLEDLRKKWGI 881
            R+++  +Q+           +LDPRR D+IA LGETTG  A  +++  M  S EG+ +++E+PR+    +       LP +TFGAAY  F+     +PD R  VRF++  +LAY+  R RE HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY PWA+  G Q   LM VY+E+ + +++ +LR + GI
Sbjct:   48 RIEITTFQRMLLGAGSSIAAILDPRRHDMIACLGETTGEDALWNIMDTMHESEEGQRIMVEKPRIHTSTIDFKRLESLPADTFGAAYVKFLKDNKVTPDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLPWALENGKQMKPLMPVYWEERWEQNVNELRAELGI 261          
The following BLAST results are available for this feature:
BLAST of FC878998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
COQ4_ARATH2.009e-9975.11Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_AEDAE4.696e-4848.97Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROAN5.373e-4440.65Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROYA3.483e-4339.25Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROER5.940e-4338.79Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROWI1.013e-4240.64Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROSI2.948e-4238.32Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROSE2.948e-4238.32Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROME2.948e-4238.32Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
COQ4_DROPS1.463e-4138.32Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878998 ID=FC878998; Name=FC878998; organism=Citrus clementina; type=EST; length=932bp
CGACGCGACACCAAAACCCAAACTCACCTTTCTCCAACACGACACCTCCA
ACGGAGCTTCCCCTTTCCGGCCGTCGCGTCGAACGCCAAAATACCCAGCT
TCGCCGTCAAGACCAAGCTTTACCCGTTTGGCGCAAGACGCTAACCCTTT
CTCACCGGCGTTCTCGTTTCTCACTGGGCTCAAGCACCCGTCGCTGCGTT
CGATGAAGGTTTTGATTTGGGGTTAATATAATGATACAAGGTGCGCGAGT
GCAGCTGAATGGGTGGCAACAGGTAGCGGTTGCTGTTGGTTCAGCAGTTG
GTGCGTTGCTAGACCCACGAAGAGCGGATCTAATAGCAGCTCTTGGAGAG
ACCACTGGCAGGCCTGCTTTTGAAAGTGTACTTCAGAGAATGAAGAGGAG
CCCTGAAGGCAGAGCAGTACTGTTGGAGCGACCACGGGTTATATATGAAA
AAGTAGGCCATGCGTGGGATCTACCACCAAACACATTTGGTGCTGCCTAT
GCAAGTTTTATGGGATCCAGGAACTTCTCTCCAGATGATCGCCCACCAGT
GCGGTTCATGGACACAGATGAACTAGCATATGTGGCCATGCGGGCTCGTG
AGGTGCACGACTTCTGGCACACCCTTTTTGGTCTTCCCACCAACTTGATT
GGTGAGTCTGCTCTAAAAGTAATAGAGTTCCAGCAAATGTACCTTCCAAT
GTGCTTCTTATCAGTTATAGGGGGCTCTGCCAGATTTAGTGAGAAGCAAA
GGAAACTGTTCTTCCAACACTACTTTCCATGGGCCATCCGGGCTGGCATG
CAGTCCACAGATCTCATGTGTGTGTATTACGAGCAGCACTTTCACGAGGA
TTTGGAGGATCTTCGAAAGAAATGGGGAATAGTCCCTTCTCCTGCTGCTC
CTGTATGACCCTATTTAAGTCAATGTATACCC
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