FC879001

Overview
NameFC879001
Unique NameFC879001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10595 contig Ccv1_Contig10595:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_XENLA (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus laevis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.947e-19
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTK-GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            L+PLDTIKT+LQ+  G SK              + G  G Y+GV +  VGS  ++A +F T E  K FL     Y S +I   A  +G +V+  I VP E+I QR Q      ++++L   L  +GI GLY GY +T+LR +P  ++ +  +E+LK
Sbjct:   24 LFPLDTIKTRLQSPLGFSK--------------SGGFRGIYAGVPSTAVGSFPNAAAFFVTYESAKRFLGSDSSYLSPIIHMAAAFLGELVACLIRVPSEVIKQRAQVSPSSTTYQMLSVTLREEGIKGLYRGYKSTVLREIPFSLVQFPLWEFLK 165          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_XENTR (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus tropicalis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.663e-19
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTK-GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            L+PLDTIKT+LQ+  G SK              + G  G Y+GV +  VGS  ++A +F T E  K  L     Y S +I   A ++G +V+  I VP E+I QR Q      ++++L   L  +GI GLY GY +T+LR +P  ++ +  +E LK
Sbjct:   24 LFPLDTIKTRLQSPLGFSK--------------SGGFRGIYAGVPSTAVGSFPNAAAFFVTYESAKQLLRSDSSYLSPIIHMAAASLGEVVACLIRVPSEVIKQRAQVSPSSTTYQMLSATLRQEGIKGLYRGYKSTVLREIPFSLVQFPLWESLK 165          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_DANRE (S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.153e-18
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPT----AGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKA 865
            L+PLDTIKT+LQ++                ++  G  G Y+GV +  +GS  ++A +F T E  KS  S    Y +  + P     A ++G IV+  I VP E++ QR QA     ++ VLL  L+ +G  GLY GY +T+LR +P  ++ +  +EYLKA
Sbjct:   24 LFPLDTIKTRLQSQQGF-------------YKAGGFRGIYAGVPSAAIGSFPNAAAFFVTYESTKSVFSG---YTTTNLAPITHMLAASLGEIVACLIRVPTEVVKQRTQANPSISTYRVLLNSLQEEGFRGLYRGYGSTVLREIPFSLVQFPLWEYLKA 167          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_HUMAN (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.395e-17
Identity = 56/158 (35.44%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  398 LYPLDTIKTKLQT-KGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFL-SKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKA 865
            L+PLDTIKT+LQ+ +G +K                G  G Y+GV +  +GS  ++A +F T E+ K FL +    Y + +    A + G +V+  I VP E++ QR Q  A  R++++   IL  +GI GLY GY +T+LR +P  ++ +  +E LKA
Sbjct:   24 LFPLDTIKTRLQSPQGFNK--------------AGGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKA 167          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_MOUSE (S-adenosylmethionine mitochondrial carrier protein OS=Mus musculus GN=Slc25a26 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.108e-17
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  398 LYPLDTIKTKLQT-KGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFL-----SKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKA 865
            L+PLDTIKT+LQ+ +G +K                G  G Y+GV +  VGS  ++A +F T E+ KS L     S  +    +L    A + G +V+  I VP E++ QR Q  A  ++ ++ L IL  +GI GLY GY +T+LR +P  ++ +  +E LKA
Sbjct:   24 LFPLDTIKTRLQSPQGFNK--------------AGGFRGIYAGVPSAAVGSFPNAAAFFLTYEYVKSLLHTDSTSHFKPVKHML----AASTGEVVACLIRVPSEVVKQRAQVSASSKTLQIFLTILSEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKA 167          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: SAMC_BOVIN (S-adenosylmethionine mitochondrial carrier protein OS=Bos taurus GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.044e-17
Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPPT---AGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKA 865
            L+PLDTIKT+LQ+                 ++  G  G Y+GV +  +GS  ++A +F T E+ K  L       S L+P T   A ++G +V+  I VP E++ QR Q  A   ++ +   IL  +GI GLY GY +T+LR +P  ++ +  +E LKA
Sbjct:   24 LFPLDTIKTRLQSPQGF-------------YKAGGFYGVYAGVPSTAIGSFPNAAAFFVTYEYVKWILHTDS--SSYLMPVTHMLAASVGEVVACLIRVPSEVVKQRAQVSASSGTFHIFSNILCQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKA 167          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 2
Query:  398 LYPLDTIKTKLQTKGASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGK-SFLSKLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQ---AGAKGRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSRTKNAN 895
            +YP+DTIKT +Q      M +S+        Q  GI G + G++AV  G+  S A++F   E  K  F+   E +  + +   AGA+  + S A+  P +++ QR+Q      KG + +   +I   +GI G Y+GY+ TL+ N+P  ++ ++S+E LK  +     N N
Sbjct:   34 MYPIDTIKTHIQAIKPGAMQTSSLQITKHIIQQHGITGLFRGLTAVAAGAAPSHAVHFSIYELLKFKFIGSDEDHHPIKV-GIAGAIATMTSEAVASPMDVVKQRLQLQITDYKGLT-DCTKRIWVKEGIRGFYSGYTTTLVMNVPYNIVYFASYESLKKIIQPWFNNKN 201          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 55/174 (31.61%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  386 TYVCLYPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIP-PTAGAMGNIVSSAIMVPKELI---TQRMQAGAKGRS------WEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            T +  +P DT+K ++QT      G    ++   D + +T   +G    Y G++A LVG +   A++FG C  GK             I    AGA+  + ++ +MVP E I    Q  QAG+ G         +V+ K+ +  GI  +Y G  ATLLR++PA     S +EYLK
Sbjct:   18 TVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEGFFALYKGMAAPLVGVSPLFAVFFGGCAVGKWLQQTDPSQEMTFIQNANAGALAGVFTTIVMVPGERIKCLLQVQQAGSAGSGVHYDGPLDVVKKLYKQGGISSIYRGTGATLLRDIPASAAYLSVYEYLK 191          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.706e-15
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  383 FTYVCL----YPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSK----LEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKG------RSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            F  VCL    +PLDT+K +LQT+     G   MYS TFD   KT   +GI G Y G++A ++G T   A+ F     GK    K    +  YP +     AG +  + ++ IM P E I   +Q  A         + +   K+ +  GI G+Y G   TL+R++PA  + + ++E+LK
Sbjct:   19 FGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLF---AAGMLSGVFTTGIMTPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLK 194          

HSP 2 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  383 FTYVCLYPLDTIKTKLQTKGAS--KMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLEIYPSVLIPP---TAGAMGNIVSSAIMVPKELITQRMQAGAKGR----SWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            FT   + P + IK  LQ + +S    Y+ T D   K +Q  GI G Y G    L+    +S +YF T E+ K+  +      S L  P    AG +  I + A+ +P +++  R Q    G+      +VL +++  +G+  LY G++A ++R  PA    +  FE
Sbjct:  123 FTTGIMTPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIRDEGVTSLYKGFNAVMIRAFPANAACFLGFE 288          
BLAST of FC879001 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 59/179 (32.96%), Postives = 88/179 (49.16%), Query Frame = 2
Query:  383 FTYVCL----YPLDTIKTKLQTK-----GASKMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLSKLE----IYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAK------GRSWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFEYLK 862
            F  VCL    +PLDT+K +LQT+     G   MYS T D   KT   +GI G Y G++A ++G T   A+ F     GK    K       YP +    TAG +  + ++ IM P E I   +Q  A         + +   K+ +  GI G Y G + TL+R++PA  + + ++E+LK
Sbjct:   19 FGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKSPEDELTYPQLF---TAGMLSGVFTTGIMTPGERIKCLLQIQASSGKNKYSGTLDCAKKLYQEFGIRGFYKGTALTLMRDVPASGMYFMTYEWLK 194          

HSP 2 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  383 FTYVCLYPLDTIKTKLQTKGAS--KMYSSTFDAIFKTFQTKGILGFYSGVSAVLVGSTASSAIYFGTCEFGKSFLS-------KLEIYPSVLIPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGR----SWEVLLKILEVDGILGLYAGYSATLLRNLPAGVLSYSSFE 853
            FT   + P + IK  LQ + +S    YS T D   K +Q  GI GFY G +  L+    +S +YF T E+ K+  +        L + P VL+   AG    I +  + +P +++  R Q    G+      +VL +++  +G+  LY G++A ++R  PA    +  FE
Sbjct:  123 FTTGIMTPGERIKCLLQIQASSGKNKYSGTLDCAKKLYQEFGIRGFYKGTALTLMRDVPASGMYFMTYEWLKNLFTPQGKSVHDLSV-PRVLV---AGGFRGIFNWVVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIREEGVTSLYKGFNAVMIRAFPANAACFLGFE 288          
The following BLAST results are available for this feature:
BLAST of FC879001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SAMC_XENLA1.947e-1937.18S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_XENTR9.663e-1936.54S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_DANRE2.153e-1835.63S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_HUMAN1.395e-1735.44S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_MOUSE3.108e-1735.80S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_BOVIN9.044e-1734.59S-adenosylmethionine mitochondrial carrier protein... [more]
MFRN_DICDI7.656e-1631.18Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]
DIF1_CAEEL7.656e-1631.61Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCAT_HUMAN1.706e-1532.96Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_RAT2.228e-1532.96Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879001 ID=FC879001; Name=FC879001; organism=Citrus clementina; type=EST; length=895bp
ACCGTTTTGGCCCCTCCATTTGGGCGACAAAAGGGCCAGAGAAAGCAGAT
GCACTGAAGATACAGCCATGGAATCAAGACTCTCTGCATCTCTGGGACTC
CCATCTCCAGACCCAAATCACTATCCACTTCTCTCAGAATCCACTTCCCT
CTTCACACACTTGAGCACAAATCTCTTATCAGCACAAAGCCACAAACCCT
TTAAAAATGACGCCAAATTTGCCTCGACTTCGCTCTCCACTGAATCCCAA
ACCAAATTCCAACCATCCAATTGGCTCAAACCCGCTTCGAGAAATAGTCC
CAAGATTCACTCTCTAATAAAGAGCCTCTCTGTTTTCGAGCGCGCCCTTA
TTGGCGCAGCCGCTGGCGGCATTGCTGGTGCGTTCACGTATGTGTGCCTT
TACCCGCTTGATACAATCAAGACCAAGCTGCAAACAAAAGGTGCTTCCAA
AATGTACTCCAGCACATTTGATGCTATCTTTAAAACCTTTCAAACGAAGG
GGATTCTAGGGTTTTACAGCGGTGTTTCGGCGGTTCTTGTGGGTTCTACT
GCCTCTTCAGCTATTTATTTTGGGACTTGTGAGTTTGGGAAATCGTTTTT
GTCAAAATTGGAGATATACCCATCTGTGCTCATCCCTCCTACTGCTGGTG
CTATGGGCAATATTGTGTCGTCAGCAATAATGGTGCCTAAGGAGTTGATT
ACTCAAAGGATGCAAGCTGGTGCAAAGGGTAGATCTTGGGAGGTTTTGTT
GAAGATTTTGGAGGTAGATGGAATTTTGGGGCTTTATGCTGGGTATTCTG
CTACATTGTTAAGGAATTTGCCTGCTGGTGTGTTGAGTTATTCGTCTTTT
GAGTACTTAAAAGCTGCGGTATTGAGTAGGACTAAGAATGCAAAT
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