FC879002

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3A_ARATH (DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.527e-66
Identity = 124/153 (81.05%), Postives = 141/153 (92.16%), Query Frame = 2

Query:   38 MDGSSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF-VDPAGYDSTDQQRLI 493
            MDG++YQRFPK+KIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDVTS+DLYS+D +V PVDF +D +  DS++ + +I
Sbjct:    1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSVSDSSEHKGII 153          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3B_ARATH (DNA-directed RNA polymerase II subunit RPB3-B OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.692e-57
Identity = 113/153 (73.86%), Postives = 131/153 (85.62%), Query Frame = 2

Query:   38 MDGSSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFV-DPAGYDSTDQQRLI 493
            MDG +YQRFP VKIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDVTS+DLYS+D +V PVDF  + +  DS++ + +I
Sbjct:    1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDLYSADPTVTPVDFTSNSSTSDSSEHKGII 153          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 72/132 (54.55%), Postives = 91/132 (68.94%), Query Frame = 2

Query:   47 SSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPV 442
            S   R P+++I E+K+D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DL S + +V+PV
Sbjct:    6 SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLSQNSAVIPV 134          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.764e-30
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 2

Query:   53 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPV 442
            Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+DL S+   V+PV
Sbjct:    3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPV 130          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = 2

Query:   53 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPV 442
            Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+DL S+   V+PV
Sbjct:    3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPV 130          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_MOUSE (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus GN=Polr2c PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.143e-29
Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 2

Query:   53 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPV 442
            Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+DL S+   V+PV
Sbjct:    3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPV 130          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_YEAST (DNA-directed RNA polymerase II subunit RPB3 OS=Saccharomyces cerevisiae GN=RPB3 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.231e-25
Identity = 64/116 (55.17%), Postives = 79/116 (68.10%), Query Frame = 2

Query:   65 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 412
            P+VKIRE   D   F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAHRLGLIPL S     + +SRDC   D    C+ CSV   L+A   S+ T +V SKDL
Sbjct:    6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL 118          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPB3_SCHPO (DNA-directed RNA polymerase II subunit RPB3 OS=Schizosaccharomyces pombe GN=rpb3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.599e-23
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = 2

Query:   71 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER-----AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 430
            + IR +  +   F L +T  ++AN+LRRV++AE+PT+AIDLVEI VN+SV+ DEF+AHRLG+IPL S        + + ++R+CD    D  C  CSVE  L AKC  + T+++ ++DL  S +S
Sbjct:    7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNS 128          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: CNJC_TETTH (Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 2

Query:   68 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YSSDHS 430
            K+ +  L++   +F L + D S+AN+LRR+++AE+ TIAI  V++  N+S L DE+IAHRLGLIPL S +     +  +C+     G+C+ C++ F LR    +++ L+VTS DL    DH+
Sbjct:    5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHT 123          

BLAST of FC879002 vs. ExPASy Swiss-Prot
Match: RPOD_METST (DNA-directed RNA polymerase subunit D OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpoD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2

Query:   71 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSSDHSVVPV 442
            ++IRE  D+ A F +   D +  N +RR+ + E+PT+AI+ V I  N + + DE +AHRLGLIP+ ++    +  S     CD +  C+ C V F L+ KC   + +  V SKDL S D +V PV
Sbjct:    3 IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRLGLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDPAVKPV 123