FC879004

Overview
NameFC879004
Unique NameFC879004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11930 contig Ccv1_Contig11930:208..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_NEMVE (Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.111e-33
Identity = 84/196 (42.86%), Postives = 112/196 (57.14%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M ++ V  C    WYP+FK+V+IR+ I  L + FV+YL  D    +LP   S+   LP    +  + E+++  E   +               KIKE+I+ LGG VFPKLNWSAP+DA+WIS   TLRC S  +I LLL+SSD++   LC A+  C D +     SF L LRKW  ++ P MEFRCFVR   LV I
Sbjct:    1 MKQQHVENCNFSSWYPRFKNVTIRSKIIPLSKEFVDYLKTDG--VVLPGKPSS---LPRHEDDESDSEEWQNLEEDPEQATVEAPEFNDIDT-KIKEAIQELGGEVFPKLNWSAPRDASWISHDNTLRCKSPGDIYLLLKSSDTIDRVLCDAFIHCEDNSTQTHDSFELILRKW-QNIYPAMEFRCFVRNNELVAI 189          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_XENLA (Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 78/196 (39.80%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E+V  CQ  +WYP FK  SIR++I  LPE   +YLLDD    L+ +          R  N  EE++ + S+   +              +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+CT+  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFVR   L+GI
Sbjct:    1 MKKEQVLNCQFGQWYPTFKKFSIRSVIIPLPENVKDYLLDDGT--LVVSGREESPGCSQRDLNCTEEDEVQWSDD--ESTATLTAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKCTTLSDIFLLFKSSDFVTHDFTQPFIYCADDSPDPNIKYELVLRKWC-ELIPGAEFRCFVRENKLIGI 191          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_XENTR (Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.317e-31
Identity = 73/196 (37.24%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E+V  CQ  +WYP+FK +SIR+++  LPE   +YLLDD G  ++     +       +++  E+E   V     +              +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+C +  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEQVLNCQFSQWYPRFKKLSIRSVVIPLPENVKDYLLDD-GTLVVSGREESPGCSQRDLNSTAEDE---VQWSDDENTATLKAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKCQTLSDIFLLFKSSDFVTHDFTQPFIYCADDSPDPNIKYELVLRKWC-ELIPGAEFRCFVKENNLIGI 191          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_DANRE (Cell division cycle protein 123 homolog OS=Danio rerio GN=cdc123 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.150e-30
Identity = 73/196 (37.24%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E+V  CQ   WYP FK  +I++LI  +P+  ++YLLDD    L+ +   N+++     ++  +EED + ++   +              +K++E+I  LGG +FPKLNWSAP+DA WI+ + +L+C S  EI LL +SSD + HDL   +  C+D +     ++ L LRKW   L P  EFRCFV+   L+ I
Sbjct:    1 MKKEQVVNCQFSVWYPLFKKHTIKSLILPIPQNVIDYLLDDGT--LVVSGSENNNSQTQANNSDSDEEDIQWTDD--ETTTTVTAPEFPEFNVKVQEAINVLGGCIFPKLNWSAPRDANWIALNSSLQCQSLSEIFLLFKSSDFITHDLTQPFLHCSDDSPDPTINYELVLRKW-SELIPGGEFRCFVKENKLIAI 191          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_RAT (Cell division cycle protein 123 homolog OS=Rattus norvegicus GN=Cdc123 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 75/196 (38.27%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E V+ CQ   WYP F+S++I+++I  LP+   +YLLDD     L  S   D    ++  +  E E+ + S+   +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C S  +I LL +SSD + HD    +  CND +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG---TLVVSGREDPPTCSQPDSGDEAEETQWSDD--ESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKSLSDIFLLFKSSDFITHDFTQPFIHCNDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGI 190          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_MOUSE (Cell division cycle protein 123 homolog OS=Mus musculus GN=Cdc123 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.271e-29
Identity = 73/196 (37.24%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E V+ CQ   WYP F+S++I+++I  LP+   +YLLDD     L  S   D    ++  +  E E+ + S+   +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG---TLVVSGREDPPTCSQSDSGNEAEETQWSDD--ESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITHDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGI 190          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_HUMAN (Cell division cycle protein 123 homolog OS=Homo sapiens GN=CDC123 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.833e-29
Identity = 72/196 (36.73%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E V  CQ   WYP F+ V+I+++I  LP+   +YLLDD         VS  D  P       ++E   +     +               K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEHVLHCQFSAWYPFFRGVTIKSVILPLPQNVKDYLLDDG-----TLVVSGRDDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFATKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGI 190          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_MACFA (Cell division cycle protein 123 homolog OS=Macaca fascicularis GN=CDC123 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.310e-29
Identity = 71/196 (36.22%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E V  CQ   WYP F+ V+I+++I  LP+   +YLLDD         VS  D  P       ++E   +     +               +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEHVLHCQFSAWYPLFRGVTIKSVILPLPQNVKDYLLDDG-----TLVVSGRDDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFATQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGI 190          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_BOVIN (Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.310e-29
Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 3
Query:  309 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            M +E V  CQ   WYP F+S++I+++I  LP+   +YLLDD         VS  +  P       ++E   +     +               K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GI
Sbjct:    1 MKKEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDG-----TLVVSGREDPPAHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCMEYELVLRKWC-ELIPGAEFRCFVKENKLIGI 190          
BLAST of FC879004 vs. ExPASy Swiss-Prot
Match: CD123_DICDI (Cell division cycle protein 123 homolog OS=Dictyostelium discoideum GN=cdc123 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.977e-28
Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 3
Query:  318 EEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPAS------VSNDDAL-----------------PNRIHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKE-------SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGI 896
            E   +CQ QEWY KFKSV+  +++  LP+ F++YL  D   F  P        V   D L                 P       +EED    +   +               + KE       SIE LGG +FPKLNWS+PKDA+W++   +L+CT+  +I LLL+SSD + HDL     + +DK  +  P + L LRKW  +L+P MEFRCFV+   L+GI
Sbjct:   10 ENKKQCQFQEWYEKFKSVTFSSIVIPLPKIFIDYLQSDQ--FTTPHEGFPEFKVDEHDDLFDDNNWSTSKNHISTLDPKYYQGYSDEEDESSDDDDSNDNDKDKKPKRIVNETEFKELSNQIIKSIEKLGGNIFPKLNWSSPKDASWMNVYNSLKCTNTTDIYLLLKSSDFINHDLMQFSINQDDKDDSLTP-YVLVLRKW-QNLQPSMEFRCFVKDNQLLGI 228          
The following BLAST results are available for this feature:
BLAST of FC879004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CD123_NEMVE1.111e-3342.86Cell division cycle protein 123 homolog OS=Nematos... [more]
CD123_XENLA3.575e-3239.80Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_XENTR2.317e-3137.24Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_DANRE1.150e-3037.24Cell division cycle protein 123 homolog OS=Danio r... [more]
CD123_RAT1.502e-3038.27Cell division cycle protein 123 homolog OS=Rattus ... [more]
CD123_MOUSE1.271e-2937.24Cell division cycle protein 123 homolog OS=Mus mus... [more]
CD123_HUMAN2.833e-2936.73Cell division cycle protein 123 homolog OS=Homo sa... [more]
CD123_MACFA6.310e-2936.22Cell division cycle protein 123 homolog OS=Macaca ... [more]
CD123_BOVIN6.310e-2936.22Cell division cycle protein 123 homolog OS=Bos tau... [more]
CD123_DICDI6.977e-2835.87Cell division cycle protein 123 homolog OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC879004 ID=FC879004; Name=FC879004; organism=Citrus clementina; type=EST; length=926bp
CAAACAGCCGACACCAGCCACACCGACACACCTTCAGTCGTCGCTGCCTC
ACTCACAGCCATCATCACTGTCGACCGTCGCAAGCCCAGCACTGCAGCTG
CCGGCAGGCAACCACGCGAGTCGCGACGAACCTGCACCAGCAGCGGCTGC
AGCGCGACGCACGGACGCCAGCAGCAATGAACCCACTCTAAGCCTTGTAT
CCAGCATAGTAGCATACCCACGTGATCTATTGATCTTTGAGATAATAGAA
GGAGTTTCAGTGCTTTAATACATTGACCGTGCTGAGCCATTATTCTACAA
TGTTAGGAATGACAGAGGAAGAAGTTAACCGTTGCCAGATTCAAGAATGG
TACCCAAAATTTAAATCTGTGTCCATAAGAACCCTGATTCATGAGCTTCC
AGAATATTTTGTGGAGTACCTTCTTGATGATTCTGGGCCCTTTCTCCTTC
CCGCTTCCGTTTCAAATGACGATGCGCTGCCAAATAGAATCCACAATGCT
TTTGAAGAAGAGGACTATCGGGTCTCTGAAGGATCTGGAGATGAAGCAGA
ACCTTCATCTCCTCCATCTTTTCCAGAACTAGAATTAAAGATCAAGGAAT
CTATTGAATCCCTTGGGGGTGCAGTTTTCCCTAAGCTGAATTGGAGTGCA
CCAAAAGATGCCGCTTGGATCAGCACTTCTGGGACCCTTCGATGCACTTC
ATTCTGTGAGATCGTACTCTTACTACGGTCATCTGATTCCTTGGTTCATG
ATTTGTGTCATGCATATGATTCATGCAATGATAAGACCTTGACAAGACCA
CCAAGTTTCTTTCTCGCCCTCCGCAAGTGGTATCCATCCTTACGACCAGA
GATGGAGTTCCGATGTTTCGTACGTGGTCGGTGCCTAGTTGGAATTCCCA
GCGAGAGGTCACGATGTGTTATCCTG
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