FC881342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1) HSP 1 Score: 435.261 bits (1118), Expect = 2.013e-121 Identity = 220/272 (80.88%), Postives = 236/272 (86.76%), Query Frame = 1 Query: 1 QRRQGMISGGLTIKALNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELLPK 816 QRRQGM SGGLTIK LNDLLDRLASSENRAEKT VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKSIF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILDGEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +Q L Y AFDVL VGDTSVIHQSLKERHELL K Sbjct: 115 QRRQGMASGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWKKLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQ--------------------LCYVAFDVLYVGDTSVIHQSLKERHELLKK 366
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2) HSP 1 Score: 409.453 bits (1051), Expect = 1.183e-113 Identity = 210/298 (70.47%), Postives = 238/298 (79.87%), Query Frame = 1 Query: 1 QRRQGMISGGLTIKALNDLLDRLASSEN--------------RAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCC------------DIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELLPK 816 QRRQGM SGGLTIK +ND LDRLA++EN R+EK S+LS+LIKKTNA EMKW++MIILKDLKLGISEKS+FHEFHPDAEDLFNVTCDL+LVCEKL DR+QRHKRQDIEVGKAVRPQL+MR+ +A +AW+KLHGK+VV ECKFDGDRIQIHKNG EIH+FSRSFLDHSEY MSK+I +N+LVDRCILDGEMLVWDT LNRFAEFGSNQEIAKAA++GL +DRQ LCC + +LSC SY AFD+L GDTSVIHQSL ERHE+L K Sbjct: 115 QRRQGMTSGGLTIKEVNDALDRLAATENSVCLESEKLLLILDRSEKASILSSLIKKTNALEMKWLLMIILKDLKLGISEKSVFHEFHPDAEDLFNVTCDLRLVCEKLNDRSQRHKRQDIEVGKAVRPQLSMRVNNASSAWKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKVIIENILVDRCILDGEMLVWDTVLNRFAEFGSNQEIAKAAKEGLETDRQ-LCCILEWIASYVLALCVNILSCQDFFFSNKRESYVAFDILYAGDTSVIHQSLTERHEILQK 411
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.607e-36 Identity = 98/291 (33.68%), Postives = 159/291 (54.64%), Query Frame = 1 Query: 46 LNDLLDRLASS-ENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVC-----------EKLKD-----------RNQRHKRQDIEVGK-------AVRPQLAMRIGDAHAAW---RKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELLPK 816 +N+ LD+L+ ++ K S+L +++ T AQE KW + IILK++K G+S+ FHPDA D FN+T +L+LVC ++LKD + Q+ ++ D+++ K ++P LA R + + + + V+E KFDG+RIQIHK+G ++ YFSR+ D + YG + I+++ VL +RCILDGE++VWD+ RF +FG+ + +A +DG+S L + C + AFD+L V D SV++ L +R LL + Sbjct: 260 INESLDQLSQPLTDKKTKVSILKKVLRSTTAQEQKWFVRIILKEMKNGLSDNITLKFFHPDAIDHFNITSNLRLVCTNLFYMTQSKQKELKDKQKLEEKENLLKQQQQQQNDLDIYKLEIKLFNPIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGERIQIHKDGEQVKYFSRNSNDSTGIYGSMFTPIVKECVLAERCILDGELIVWDSISQRFEDFGNLKTLA-LNKDGISGSGDPLGINYGKQLC-----------FIAFDILFVKDQSVMNLPLMQRLMLLKR 538
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 5.435e-34 Identity = 94/274 (34.31%), Postives = 146/274 (53.28%), Query Frame = 1 Query: 25 GGLTIKALNDLLDRLASSENRAEKTSV---LSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHA------MSKIIEQNVL---VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELL 810 G LT++ +N+LLD +A++ K V L LI ++ A E KW+I +I+KDLKLG+S+++IF FHPDA +L NVT DL+ VC +L D + I + A +P LA I D ++++ + IE K DG+R+Q+HK+G YFSR+ D+++ A ++ I NV + CILDGEM+ ++ F + G+ +I + D SD Q C FDVL + D + H+SL +R+++L Sbjct: 146 GRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLITQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLA-AIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPVDGSLTPFI-HNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVED---SDLQTCFC--------------------VFDVLMINDQKLAHESLSKRYKIL 394
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_PONAB (DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32 Identity = 93/273 (34.07%), Postives = 145/273 (53.11%), Query Frame = 1 Query: 25 GGLTIKALNDLLDRLASSENRAEKTSV---LSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHA------MSKIIEQNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELL 810 G LTI+ +NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D + + + IE K DG+R+Q+HK+G YFSR+ ++++ A ++ I D CILDGEM+ ++ + F + G+ +I + D SD Q C FDVL V + + H++L++R+E+L Sbjct: 141 GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKTDIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQTCYC--------------------VFDVLMVNNKKLGHETLRKRYEIL 389
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_HUMAN (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32 Identity = 93/273 (34.07%), Postives = 145/273 (53.11%), Query Frame = 1 Query: 25 GGLTIKALNDLLDRLASSENRAEKTSV---LSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHA------MSKIIEQNVLVD--RCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELL 810 G LTI+ +NDLLD +AS+ + K + L LI +++A E KW+I +I+KDLKLG+S+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA I D + + + IE K DG+R+Q+HK+G YFSR+ ++++ A ++ I D CILDGEM+ ++ + F + G+ +I + D SD Q C FDVL V + + H++L++R+E+L Sbjct: 141 GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVED---SDLQTCYC--------------------VFDVLMVNNKKLGHETLRKRYEIL 389
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.253e-30 Identity = 91/273 (33.33%), Postives = 147/273 (53.85%), Query Frame = 1 Query: 25 GGLTIKALNDLLDRLASSENRAEKTSV---LSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHS-EYGH-----AMSKIIEQ--NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELL 810 G LTI+ +N+LLD +AS+ + +K V L LI +++A E KW+I +I+KDLKLGIS+++IF FH DA +L NVT DL+ VC +L D + I + A +P LA + D + + + + IE K DG+R+Q+HK+G+ YFSR+ +++ ++G +++ I V CILDGEM+ ++ + F + G +I + D L +C Y FDVL V + ++L++R+E+L Sbjct: 141 GSLTIQQVNELLDLVASNNSGKKKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLGISQQTIFSIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLA-AVADVERVEKDMKQQSLYIETKLDGERMQMHKDGALYRYFSRNGYNYTDQFGESPQEGSLTPFIHNAFGTDVQACILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDS------------GLQTC-----------YSVFDVLMVNKKKLGRETLRKRYEIL 389
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_COPCI (DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29 Identity = 78/216 (36.11%), Postives = 124/216 (57.41%), Query Frame = 1 Query: 4 RRQGMISGGLTIKALNDLLDRLASSENRAE-KTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQR--HKRQDIEVGKAVRPQLAMR-IGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQ--NVLVDRCILDGEMLVWDTSLNRFAEFGS 615 +R +I G LTI LN++LD +A + +++ ++ +L + + A E +WII IILKD+ + + E ++F FHPDA+DL+N DLK V +L D ++R K ++I++ A P L R + + G + +IE K DG+R+Q+HK G+E Y SR D++ YG +++ I+ + +D ILDGEMLVWD R FG+ Sbjct: 150 KRSSVIEGTLTIDELNEILDDIAKNMGKSDVQSKILRRIYNNSTADEQRWIIRIILKDMNISVKETTVFAVFHPDAQDLYNTCSDLKKVAWELWDPSRRLNAKDKEIQIFHAFAPMLCKRPTRKIEETVKAMGGSKFIIEEKLDGERMQLHKRGNEYFYCSRKGKDYTYLYGKHIGAGSLTPFIDSAFDSRIDDIILDGEMLVWDPVSERNLPFGT 365
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_COPC7 (DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=LIG4 PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29 Identity = 78/216 (36.11%), Postives = 124/216 (57.41%), Query Frame = 1 Query: 4 RRQGMISGGLTIKALNDLLDRLASSENRAE-KTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQR--HKRQDIEVGKAVRPQLAMR-IGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGH-----AMSKIIEQ--NVLVDRCILDGEMLVWDTSLNRFAEFGS 615 +R +I G LTI LN++LD +A + +++ ++ +L + + A E +WII IILKD+ + + E ++F FHPDA+DL+N DLK V +L D ++R K ++I++ A P L R + + G + +IE K DG+R+Q+HK G+E Y SR D++ YG +++ I+ + +D ILDGEMLVWD R FG+ Sbjct: 150 KRSSVIEGTLTIDELNEILDDIAKNMGKSDVQSKILRRIYNNSTADEQRWIIRIILKDMNISVKETTVFAVFHPDAQDLYNTCSDLKKVAWELWDPSRRLNAKDKEIQIFHAFAPMLCKRPTRKIEETVKAMGGSKFIIEEKLDGERMQLHKRGNEYFYCSRKGKDYTYLYGKHIGAGSLTPFIDSAFDSRIDDIILDGEMLVWDPVSERNLPFGT 365
BLAST of FC881342 vs. ExPASy Swiss-Prot
Match: DNLI4_YARLI (DNA ligase 4 OS=Yarrowia lipolytica GN=LIG4 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27 Identity = 82/279 (29.39%), Postives = 139/279 (49.82%), Query Frame = 1 Query: 25 GGLTIKALNDLLDRLASSE-NRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVG--KAVRPQLAM--RIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKN--GSEIHYFSRSFLDHSE-YGHAMSKIIEQ---------NVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCCDIFLLSCC*IRKHKL*LSYFAFDVLEVGDTSVIHQSLKERHELL 810 G +T+ +N+ LD LA E ++A++ +L+ K NA E+KW++ IIL+ +K+ +EK F +HPDAE LFNVT LK VC +L D +R + +V PQ+A + A + G+ IE K DG+R+Q+H + G++ H++SR D +E YG+++ N V C+LDGEM+ +D + + FG+ + + ++ L+ + + + FD+L + D ++ +L ER L Sbjct: 174 GHMTVDEVNERLDLLADGETDQAKQIEILTYFYKHMNATELKWLVNIILRQMKMNATEKVFFEPWHPDAESLFNVTASLKRVCWELTDPTKRLTSAEAQVSLFACFMPQIAAFPKYSGQDIAGKHFKGRPFYIEEKIDGERMQMHMSEYGNKFHWWSRRSKDFTETYGNSLDDASGSLTKRLRGIINPKVRNCVLDGEMVAYDPATKKIIPFGTLRTANRNEQNDLNLTKPM---------------------FMVFDILLLNDKPLVDYTLAERKRTL 431 The following BLAST results are available for this feature:
BLAST of FC881342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC881342 ID=FC881342; Name=FC881342; organism=Citrus clementina; type=EST; length=819bpback to top |