FC881307

Overview
NameFC881307
Unique NameFC881307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSNA_ARATH (Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.962e-70
Identity = 140/225 (62.22%), Postives = 162/225 (72.00%), Query Frame = 1
Query:   58 SLSGASDP-FRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEELPALVYEARPTVS--ENERNRRSGLRFLL 723
            SLS  SDP  R+AANL+Y+E P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVL              GTMGG            PVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFTKLPEWTTW                PGGPLKLLVELASSRDEELPA+VYEARPTVS     RNR S LR L+
Sbjct:   33 SLSVTSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVL--------------GTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEELPAMVYEARPTVSSGNQRRNRGSSLRALV 243          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSNB_ARATH (Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.408e-40
Identity = 89/211 (42.18%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   64 SGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEELPALVYEARPTVSENERN 696
            S +S  F + A   Y E   DSS  K  GA+LN++VFV  I + TF+LVLL+Y     FLK Y+ FSAF VL              G +GG            P+D+ T  +LLFNF++VGV ++F     IL+ Q Y+V +G+++A +FT LPEWTTW                P GPL+LLVE+A SRDE++PALVYEARP +  + R+
Sbjct:   44 SSSSASFSSIATAAYSESDSDSSWDKFVGALLNSVVFVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIVL--------------GNLGGEILVLLIDRFRFPIDSITFLILLFNFSVVGVFAVFMSKFSILITQGYLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLLPVGPLRLLVEMAISRDEDIPALVYEARPVIRNDSRS 240          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSNA_DICDI (Presenilin-A OS=Dictyostelium discoideum GN=psenA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 48/172 (27.91%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  151 AVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEELPALVYEA 666
            +V+N+L+F+ +I + T ++V+LY +     L  ++  ++  +L              G  GG             +D  T  ++++NF++ G++ +F    P LL Q Y++ + ++MA +F++LP+WTTW                PGGPL++L+E A  R+E +PA++Y A
Sbjct:  227 SVVNSLIFLAVIILSTTIMVVLYKFKLMKALYAWLMGTSILLL--------------GVFGGFLFLILLAYLNLGLDYVTFVIVVWNFSVGGIVCIFWYS-PKLLNQGYLISISVLMALFFSRLPDWTTWGILSIVSIYDIFAVLCPGGPLRILIETAQKRNENIPAMIYNA 383          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_XENLA (Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 62/198 (31.31%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ +  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F++       +LG +               VD  T  +L++NF +VG++ +   G P+LL+QAY++ +  +MA  F K LPEWTTW                P GPL++LVE A  R+E L PAL+Y +
Sbjct:   74 RFDGQLIYTPFTEDTESVGQRALNSILNATIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSYI------YLGEV--------FKTYNVAVDYITLALLIWNFGVVGMICIHWKG-PLLLQQAYLIMISALMALVFIKYLPEWTTWLILAVISVYDLVAVLSPKGPLRMLVETAQERNETLFPALIYSS 256          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_MICMU (Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 63/198 (31.82%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   +VLNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F+        +LG +               VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSVLNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI------YLGEV--------FKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_PONAB (Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F+        +LG +               VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI------YLGEV--------FKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_HUMAN (Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F+        +LG +               VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI------YLGEV--------FKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_MACFA (Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 62/198 (31.31%), Postives = 99/198 (50.00%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F+         LG +               VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFKN------LGEV--------FKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_MOUSE (Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   ++LNA + + +I I+T LLV+LY Y     +  ++  S+  +L  F+        +LG +               VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVIMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI------YLGEV--------FKTYNVAVDYVTVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC881307 vs. ExPASy Swiss-Prot
Match: PSN1_RAT (Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLVDFAHAEVLLCSWLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEEL-PALVYEA 666
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L  F+        +LG +               VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFI------YLGEV--------FKTYNVAVDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
The following BLAST results are available for this feature:
BLAST of FC881307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSNA_ARATH4.962e-7062.22Presenilin-like protein At1g08700 OS=Arabidopsis t... [more]
PSNB_ARATH1.408e-4042.18Presenilin-like protein At2g29900 OS=Arabidopsis t... [more]
PSNA_DICDI1.515e-1827.91Presenilin-A OS=Dictyostelium discoideum GN=psenA ... [more]
PSN1_XENLA1.978e-1831.31Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1[more]
PSN1_MICMU9.819e-1831.82Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 S... [more]
PSN1_PONAB1.282e-1731.31Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1[more]
PSN1_HUMAN1.282e-1731.31Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1[more]
PSN1_MACFA2.187e-1731.31Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 ... [more]
PSN1_MOUSE2.857e-1731.31Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1[more]
PSN1_RAT3.731e-1730.81Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC881307 ID=FC881307; Name=FC881307; organism=Citrus clementina; type=EST; length=725bp
TCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCCATC
GGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCAATC
TCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAGGGC
GCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCACTTT
CCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGAATT
ACGTGCGCTTCTCCGCCTTTTTCGTCTTAGTGGATTTTGCTCATGCGGAG
GTGTTACTGTGTTCTTGGCTAGGTACAATGGGAGGTTCGATCTTTTTGTC
GATCATTCAGCAATTCTCTATACCTGTCGATGCATTTACATGCTTTGTAC
TGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGTTTTCGGGTGGG
ATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATGGGAATCATTAT
GGCAGCCTGGTTTACAAAGCTGCCCGAGTGGACTACGTGGGCCTTGCTAC
TGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGCCTGGTGGGCCC
CTTAAGTTGTTGGTGGAGTTGGCCTCTAGTCGAGATGAGGAACTTCCTGC
TTTGGTGTATGAAGCTCGGCCAACGGTTTCAGAAAATGAGAGAAACCGAA
GATCAGGCTTGAGGTTTTTGCTTGG
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